/*******************************************************************************
* GenPlay, Einstein Genome Analyzer
* Copyright (C) 2009, 2014 Albert Einstein College of Medicine
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
* Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
* Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
* Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
*
* Website: <http://genplay.einstein.yu.edu>
******************************************************************************/
package edu.yu.einstein.genplay.dataStructure.scoredChromosomeWindow;
import edu.yu.einstein.genplay.dataStructure.chromosomeWindow.AbstractChromosomeWindow;
import edu.yu.einstein.genplay.util.HashCodeUtil;
import edu.yu.einstein.genplay.util.NumberFormats;
/**
* This class provides a skeletal implementation of the {@link ScoredChromosomeWindow} interface
* to minimize the effort required to implement this interface.
* @author Julien Lajugie
*/
public abstract class AbstractScoredChromosomeWindow extends AbstractChromosomeWindow implements ScoredChromosomeWindow {
/** Generated serial ID */
private static final long serialVersionUID = -1041340326045619128L;
@Override
public boolean equals(Object obj) {
if (this == obj) {
return true;
}
if (obj == null) {
return false;
}
if (getClass() != obj.getClass()) {
return false;
}
ScoredChromosomeWindow other = (ScoredChromosomeWindow) obj;
if (getStart() != other.getStart()) {
return false;
}
if (getStop() != other.getStop()) {
return false;
}
if (getScore() != other.getScore()) {
if (!Float.isNaN(getScore()) || !Float.isNaN(other.getScore())) {
// needed because in java NaN == NaN returns false
return false;
}
}
return true;
}
@Override
public int hashCode() {
int hashCode = HashCodeUtil.SEED;
hashCode = HashCodeUtil.hash(hashCode, getStart());
hashCode = HashCodeUtil.hash(hashCode, getStop());
hashCode = HashCodeUtil.hash(hashCode, getScore());
return hashCode;
}
@Override
public String toString() {
String startStr = NumberFormats.getPositionFormat().format(getStart());
String stopStr = NumberFormats.getPositionFormat().format(getStop());
return startStr + "-" + stopStr + " : " + getScore();
}
}