IslandDialogInformation.java

/*******************************************************************************
 * GenPlay, Einstein Genome Analyzer
 * Copyright (C) 2009, 2014 Albert Einstein College of Medicine
 * 
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 * Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
 *          Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
 *          Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
 * 
 * Website: <http://genplay.einstein.yu.edu>
 ******************************************************************************/
package edu.yu.einstein.genplay.gui.dialog.peakFinderDialog.islandPanel;

import java.awt.Dimension;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.Insets;

import javax.swing.JLabel;

import edu.yu.einstein.genplay.core.operation.binList.peakFinder.IslandFinder;


/**
 * This panel shows additional information for the island finder frame settings
 * 
 * @author Nicolas
 * @version 0.1
 */
final class IslandDialogInformation extends IslandDialogFieldset{

	private static final long serialVersionUID = -1616307602412859645L;

	//Constant values
	private static final int NAME_WIDTH = (int)Math.round(IslandDialogFieldset.FIELDSET_WIDTH * 0.35);
	private static final int UNIT_WIDTH = (int)Math.round(IslandDialogFieldset.FIELDSET_WIDTH * 0.4);
	private static final int MIN_VALUE_WIDTH = (int)Math.round(IslandDialogFieldset.FIELDSET_WIDTH * 0.1);

	//Graphics elements
	private final JLabel jlWindowSizeName;		//for the window size
	private final JLabel jlWindowSizeValue;
	private final JLabel jlWindowSizeUnit;

	private final JLabel jlAverageName;			//for the average
	private final JLabel jlAverageValue;
	private final JLabel jlAverageUnit;

	private final JLabel jlPValueName;			//for the p-value
	private final JLabel jlPValueValue;


	/**
	 * Constructor for IslandDialogInformation
	 * @param title		fieldset title
	 */
	IslandDialogInformation(String title, IslandFinder island) {
		super(title, island);

		//Set "window size" information
		jlWindowSizeName = new JLabel("Window size");
		jlWindowSizeValue = new JLabel("" + island.getBinList().getBinSize());
		jlWindowSizeUnit = new JLabel("bp");

		//Set "average" information
		jlAverageName = new JLabel("Average");
		Long average = Math.round(island.getLambda()*100)/100;
		jlAverageValue = new JLabel(average.toString());
		jlAverageUnit = new JLabel("values / window");

		//Set "p-value" information
		jlPValueName = new JLabel("P-value");
		jlPValueValue = new JLabel("-");

		//Dimension PreferredSize
		jlWindowSizeName.setPreferredSize(new Dimension(IslandDialogInformation.NAME_WIDTH, IslandDialogFieldset.LINE_HEIGHT));
		jlWindowSizeValue.setPreferredSize(new Dimension(IslandDialogInformation.MIN_VALUE_WIDTH, IslandDialogFieldset.LINE_HEIGHT));
		jlWindowSizeUnit.setPreferredSize(new Dimension(IslandDialogInformation.UNIT_WIDTH, IslandDialogFieldset.LINE_HEIGHT));
		jlAverageName.setPreferredSize(new Dimension(IslandDialogInformation.NAME_WIDTH, IslandDialogFieldset.LINE_HEIGHT));
		jlAverageValue.setPreferredSize(new Dimension(IslandDialogInformation.MIN_VALUE_WIDTH, IslandDialogFieldset.LINE_HEIGHT));
		jlAverageUnit.setPreferredSize(new Dimension(IslandDialogInformation.UNIT_WIDTH, IslandDialogFieldset.LINE_HEIGHT));
		jlPValueName.setPreferredSize(new Dimension(IslandDialogInformation.NAME_WIDTH, IslandDialogFieldset.LINE_HEIGHT));

		//Tool Tip Text
		String sWindowSize = "Window size";
		String sAverage = "Means of value by window";
		String sPValue = "Probability to get false results";
		jlWindowSizeName.setToolTipText(sWindowSize);
		jlWindowSizeValue.setToolTipText(sWindowSize);
		jlAverageName.setToolTipText(sAverage);
		jlAverageValue.setToolTipText(sAverage);
		jlPValueName.setToolTipText(sPValue);
		jlPValueValue.setToolTipText(sPValue);

		//Layout
		setLayout(new GridBagLayout());
		GridBagConstraints gbc = new GridBagConstraints();
		Insets gbcInsets = new Insets (IslandDialogFieldset.LINE_TOP_INSET_HEIGHT, 0, IslandDialogFieldset.LINE_BOTTOM_INSET_HEIGHT, 0);

		// jlWindowSizeName
		gbc.gridx = 0;
		gbc.gridy = 0;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.LINE_START;
		gbc.fill = GridBagConstraints.WEST;
		gbc.insets = gbcInsets;
		this.add(jlWindowSizeName, gbc);

		// jlWindowSizeValue
		gbc.gridx = 1;
		gbc.gridy = 0;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.CENTER;
		gbc.fill = GridBagConstraints.CENTER;
		gbc.insets = gbcInsets;
		this.add(jlWindowSizeValue, gbc);

		// jlWindowSizeUnit
		gbc.gridx = 2;
		gbc.gridy = 0;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.LINE_START;
		gbc.fill = GridBagConstraints.WEST;
		gbc.insets = gbcInsets;
		this.add(jlWindowSizeUnit, gbc);

		// jlAverageName
		gbc.gridx = 0;
		gbc.gridy = 1;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.LINE_START;
		gbc.fill = GridBagConstraints.WEST;
		gbc.insets = gbcInsets;
		this.add(jlAverageName, gbc);

		// jlAverageValue
		gbc.gridx = 1;
		gbc.gridy = 1;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.CENTER;
		gbc.fill = GridBagConstraints.CENTER;
		gbc.insets = gbcInsets;
		this.add(jlAverageValue, gbc);

		// jlAverageUnit
		gbc.gridx = 2;
		gbc.gridy = 1;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.LINE_START;
		gbc.fill = GridBagConstraints.WEST;
		gbc.insets = gbcInsets;
		this.add(jlAverageUnit, gbc);

		// jlPValueName
		gbc.gridx = 0;
		gbc.gridy = 2;
		gbc.gridwidth = 1;
		gbc.anchor = GridBagConstraints.LINE_START;
		gbc.fill = GridBagConstraints.WEST;
		gbc.insets = gbcInsets;
		this.add(jlPValueName, gbc);

		// jlPValueValue
		gbc.gridx = 1;
		gbc.gridy = 2;
		gbc.gridwidth = 3;
		gbc.anchor = GridBagConstraints.LINE_START;
		gbc.fill = GridBagConstraints.CENTER;
		gbc.insets = gbcInsets;
		this.add(jlPValueValue, gbc);

		// Dimension
		setRows(gbc.gridy + 1);

		setVisible(true);
	}

	//Getter
	protected JLabel getJlPValueValue() {
		return jlPValueValue;
	}
}