/*******************************************************************************
* GenPlay, Einstein Genome Analyzer
* Copyright (C) 2009, 2014 Albert Einstein College of Medicine
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
* Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
* Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
* Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
*
* Website: <http://genplay.einstein.yu.edu>
******************************************************************************/
package edu.yu.einstein.genplay.dataStructure.list.genomeWideList.SCWList;
import edu.yu.einstein.genplay.dataStructure.chromosome.Chromosome;
import edu.yu.einstein.genplay.dataStructure.enums.SCWListType;
import edu.yu.einstein.genplay.dataStructure.list.genomeWideList.GenomicListView;
import edu.yu.einstein.genplay.dataStructure.list.genomeWideList.SCWList.SCWListStats.SCWListStats;
import edu.yu.einstein.genplay.dataStructure.scoredChromosomeWindow.ScoredChromosomeWindow;
/**
* A {@link GenomicListView} of {@link ScoredChromosomeWindow}
* @author Julien Lajugie
*/
public interface SCWList extends GenomicListView<ScoredChromosomeWindow> {
/**
* @return the number of steps needed to create a {@link SCWList} simimlar to this one
*/
public int getCreationStepCount();
/**
* @param chromosome a {@link Chromosome}
* @param position a position on the chromosome
* @return the score at the specified position
*/
public float getScore(Chromosome chromosome, int position);
/**
* @return the type of the {@link SCWList}
*/
public SCWListType getSCWListType();
/**
* @return the statistics of the {@link SCWList}
*/
public SCWListStats getStatistics();
}