/*******************************************************************************
* GenPlay, Einstein Genome Analyzer
* Copyright (C) 2009, 2014 Albert Einstein College of Medicine
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
* Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
* Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
* Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
*
* Website: <http://genplay.einstein.yu.edu>
******************************************************************************/
package edu.yu.einstein.genplay.gui.dialog.newCurveLayerDialog;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.Insets;
import javax.swing.BorderFactory;
import javax.swing.ImageIcon;
import javax.swing.JCheckBox;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JSpinner;
import javax.swing.SpinnerNumberModel;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import edu.yu.einstein.genplay.util.Images;
/**
* Panel of a {@link NewCurveLayerDialog} with an input box for the bin size
* @author Julien Lajugie
*/
class BinSizePanel extends JPanel {
private static final long serialVersionUID = -7359118518250220846L; // generated ID
private static final int MAX_BINSIZE = Integer.MAX_VALUE; // maximum bin size
private static final int SPINNER_STEP = 100; // step of the spinner
private final JCheckBox jcbCreateBinList; // check box that can be checked to create a bin lists
private final JLabel jlCreateBinListHelp; // label create bin list help
private final JLabel jlBinSize; // label bin size
private final JSpinner jsBinSize; // spinner for the binsize input
private final JLabel jlInformation; // label with important informations
private static int defaultBinSize = 1000; // default binsize
private static boolean defaultIsCreateBinListSelected; // default state of the check box to create bin lists
/**
* Creates an instance of {@link BinSizePanel}
*/
BinSizePanel() {
super();
// check box
jcbCreateBinList = new JCheckBox("Bin Data");
jcbCreateBinList.setSelected(defaultIsCreateBinListSelected);
jcbCreateBinList.addChangeListener(new ChangeListener() {
@Override
public void stateChanged(ChangeEvent e) {
if (jsBinSize != null) {
jsBinSize.setEnabled(jcbCreateBinList.isSelected());
}
}
});
// tooltip
jlCreateBinListHelp = new JLabel(new ImageIcon(Images.getHelpImage()));
jlCreateBinListHelp.setToolTipText("<html>Choose this option to create bins of a specified constant length.<br/>" +
"The score of each bin is the result of the sum, average maximum or minimum of the scores of the reads / windows that overlap the bin.<br/>" +
"If a read / window overlap more than one bin, its score is divided between the different bins proportionally to the length that overlaps each bin.<br/>" +
"Bin lists are generally more memory efficient and offer operations that are not available otherwise.</html>");
// label bin size
jlBinSize = new JLabel("Bin Size =");
// spinner
SpinnerNumberModel snm = new SpinnerNumberModel(defaultBinSize, 1, MAX_BINSIZE, SPINNER_STEP);
jsBinSize = new JSpinner(snm);
jsBinSize.setEnabled(defaultIsCreateBinListSelected);
String infoText = "<html><i><b>Important:</b> The type of the new layer will be:<br/>";
infoText += "- <u>Fixed Window</u> if Bin Data is checked<br/>";
infoText += "- <u>Variable Window</u> if Bin Data is unchecked</i></html>";
jlInformation = new JLabel(infoText);
// add components
setLayout(new GridBagLayout());
GridBagConstraints gbc = new GridBagConstraints();
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = GridBagConstraints.BOTH;
gbc.gridwidth = 2;
add(jcbCreateBinList, gbc);
gbc.fill = GridBagConstraints.NONE;
gbc.gridx = 2;
gbc.gridwidth = 1;
add(jlCreateBinListHelp, gbc);
gbc.anchor = GridBagConstraints.CENTER;
gbc.gridx = 0;
gbc.gridy = 1;
gbc.gridwidth = 1;
add(jlBinSize, gbc);
gbc.gridx = 1;
gbc.gridwidth = 2;
add(jsBinSize, gbc);
gbc.insets = new Insets(5, 5, 10, 5);
gbc.gridx = 0;
gbc.gridy = 2;
gbc.gridwidth = 3;
add(jlInformation, gbc);
setBorder(BorderFactory.createTitledBorder("Bin"));
}
/**
* @return the selected binsize
*/
int getBinSize() {
return (Integer) jsBinSize.getValue();
}
/**
* @return true if the user decided to create a bin list
*/
boolean isCreateBinListSelected() {
return jcbCreateBinList.isSelected();
}
/**
* Saves the selected bin size as default
*/
void saveDefault() {
defaultIsCreateBinListSelected = isCreateBinListSelected();
defaultBinSize = getBinSize();
}
}