/*
* Copyright 1998-2009 University Corporation for Atmospheric Research/Unidata
*
* Portions of this software were developed by the Unidata Program at the
* University Corporation for Atmospheric Research.
*
* Access and use of this software shall impose the following obligations
* and understandings on the user. The user is granted the right, without
* any fee or cost, to use, copy, modify, alter, enhance and distribute
* this software, and any derivative works thereof, and its supporting
* documentation for any purpose whatsoever, provided that this entire
* notice appears in all copies of the software, derivative works and
* supporting documentation. Further, UCAR requests that the user credit
* UCAR/Unidata in any publications that result from the use of this
* software or in any product that includes this software. The names UCAR
* and/or Unidata, however, may not be used in any advertising or publicity
* to endorse or promote any products or commercial entity unless specific
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* understands that UCAR/Unidata is not obligated to provide the user with
* any support, consulting, training or assistance of any kind with regard
* to the use, operation and performance of this software nor to provide
* the user with any updates, revisions, new versions or "bug fixes."
*
* THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
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* WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
*/
package ucar.nc2;
import junit.framework.*;
import ucar.ma2.*;
import ucar.nc2.util.Misc;
import ucar.unidata.util.test.TestDir;
import java.io.*;
import java.util.ArrayList;
/** Test reading variable data */
public class TestReadSection extends TestCase {
public TestReadSection( String name) {
super(name);
}
public void testReadVariableSection() throws InvalidRangeException, IOException {
NetcdfFile ncfile = TestDir.openFileLocal("testWrite.nc");
Variable temp = ncfile.findVariable("temperature");
assert(null != temp);
int[] origin = {3,6};
int[] shape = {12,17};
Variable tempSection = temp.section(new Section(origin, shape));
// read array section
Array Asection;
try {
Asection = tempSection.read();
} catch (IOException e) {
System.err.println("ERROR reading file");
e.printStackTrace();
assert(false);
return;
}
assert Asection.getRank() == 2;
assert shape[0] == Asection.getShape()[0];
assert shape[1] == Asection.getShape()[1];
// read entire array
Array A;
try {
A = temp.read();
} catch (IOException e) {
System.err.println("ERROR reading file");
assert(false);
return;
}
assert (A.getRank() == 2);
// compare
Array Asection2 = A.section( origin, shape, null);
assert (Asection2.getRank() == 2);
assert (shape[0] == Asection2.getShape()[0]);
assert (shape[1] == Asection2.getShape()[1]);
IndexIterator s1 = Asection.getIndexIterator();
IndexIterator s2 = Asection2.getIndexIterator();
int count = 0;
while (s1.hasNext()) {
double d1 = s1.getDoubleNext();
double d2 = s2.getDoubleNext();
assert Misc.closeEnough(d1, d2) : count+" "+d1 +" != "+d2;
count++;
}
ncfile.close();
System.out.println( "*** testReadVariableSection done");
}
public void testReadVariableSection2() throws InvalidRangeException, IOException {
NetcdfFile ncfile = TestDir.openFileLocal("testWrite.nc");
Variable temp = null;
assert(null != (temp = ncfile.findVariable("temperature")));
ArrayList<Range> ranges = new ArrayList<Range>();
Range r0 = new Range(3,14);
Range r1 = new Range(6,22);
ranges.add( r0);
ranges.add( r1);
Variable tempSection = temp.section(ranges);
assert tempSection.getRank() == 2;
int[] vshape = tempSection.getShape();
assert r0.length() == vshape[0];
assert r1.length() == vshape[1];
// read array section
Array Asection;
try {
Asection = tempSection.read();
} catch (IOException e) {
System.err.println("ERROR reading file");
e.printStackTrace();
assert(false);
return;
}
assert Asection.getRank() == 2;
assert r0.length() == Asection.getShape()[0];
assert r1.length() == Asection.getShape()[1];
// read entire array
Array A;
try {
A = temp.read();
} catch (IOException e) {
System.err.println("ERROR reading file");
assert(false);
return;
}
assert (A.getRank() == 2);
// compare
Array Asection2 = A.section( ranges);
assert (Asection2.getRank() == 2);
assert (r0.length() == Asection2.getShape()[0]);
assert (r1.length() == Asection2.getShape()[1]);
IndexIterator s1 = Asection.getIndexIterator();
IndexIterator s2 = Asection2.getIndexIterator();
int count = 0;
while (s1.hasNext()) {
double d1 = s1.getDoubleNext();
double d2 = s2.getDoubleNext();
assert Misc.closeEnough( d1, d2) : count+" "+d1 +" != "+d2;
count++;
}
ncfile.close();
System.out.println( "*** testReadVariableSection2 done");
}
}