/* * Copyright 1998-2009 University Corporation for Atmospheric Research/Unidata * * Portions of this software were developed by the Unidata Program at the * University Corporation for Atmospheric Research. * * Access and use of this software shall impose the following obligations * and understandings on the user. The user is granted the right, without * any fee or cost, to use, copy, modify, alter, enhance and distribute * this software, and any derivative works thereof, and its supporting * documentation for any purpose whatsoever, provided that this entire * notice appears in all copies of the software, derivative works and * supporting documentation. Further, UCAR requests that the user credit * UCAR/Unidata in any publications that result from the use of this * software or in any product that includes this software. The names UCAR * and/or Unidata, however, may not be used in any advertising or publicity * to endorse or promote any products or commercial entity unless specific * written permission is obtained from UCAR/Unidata. The user also * understands that UCAR/Unidata is not obligated to provide the user with * any support, consulting, training or assistance of any kind with regard * to the use, operation and performance of this software nor to provide * the user with any updates, revisions, new versions or "bug fixes." * * THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE * DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL, * INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING * FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, * NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION * WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE. */ package ucar.nc2; import junit.framework.*; import ucar.ma2.*; import ucar.nc2.util.Misc; import ucar.unidata.util.test.TestDir; import java.io.*; import java.util.ArrayList; /** Test reading variable data */ public class TestReadSection extends TestCase { public TestReadSection( String name) { super(name); } public void testReadVariableSection() throws InvalidRangeException, IOException { NetcdfFile ncfile = TestDir.openFileLocal("testWrite.nc"); Variable temp = ncfile.findVariable("temperature"); assert(null != temp); int[] origin = {3,6}; int[] shape = {12,17}; Variable tempSection = temp.section(new Section(origin, shape)); // read array section Array Asection; try { Asection = tempSection.read(); } catch (IOException e) { System.err.println("ERROR reading file"); e.printStackTrace(); assert(false); return; } assert Asection.getRank() == 2; assert shape[0] == Asection.getShape()[0]; assert shape[1] == Asection.getShape()[1]; // read entire array Array A; try { A = temp.read(); } catch (IOException e) { System.err.println("ERROR reading file"); assert(false); return; } assert (A.getRank() == 2); // compare Array Asection2 = A.section( origin, shape, null); assert (Asection2.getRank() == 2); assert (shape[0] == Asection2.getShape()[0]); assert (shape[1] == Asection2.getShape()[1]); IndexIterator s1 = Asection.getIndexIterator(); IndexIterator s2 = Asection2.getIndexIterator(); int count = 0; while (s1.hasNext()) { double d1 = s1.getDoubleNext(); double d2 = s2.getDoubleNext(); assert Misc.closeEnough(d1, d2) : count+" "+d1 +" != "+d2; count++; } ncfile.close(); System.out.println( "*** testReadVariableSection done"); } public void testReadVariableSection2() throws InvalidRangeException, IOException { NetcdfFile ncfile = TestDir.openFileLocal("testWrite.nc"); Variable temp = null; assert(null != (temp = ncfile.findVariable("temperature"))); ArrayList<Range> ranges = new ArrayList<Range>(); Range r0 = new Range(3,14); Range r1 = new Range(6,22); ranges.add( r0); ranges.add( r1); Variable tempSection = temp.section(ranges); assert tempSection.getRank() == 2; int[] vshape = tempSection.getShape(); assert r0.length() == vshape[0]; assert r1.length() == vshape[1]; // read array section Array Asection; try { Asection = tempSection.read(); } catch (IOException e) { System.err.println("ERROR reading file"); e.printStackTrace(); assert(false); return; } assert Asection.getRank() == 2; assert r0.length() == Asection.getShape()[0]; assert r1.length() == Asection.getShape()[1]; // read entire array Array A; try { A = temp.read(); } catch (IOException e) { System.err.println("ERROR reading file"); assert(false); return; } assert (A.getRank() == 2); // compare Array Asection2 = A.section( ranges); assert (Asection2.getRank() == 2); assert (r0.length() == Asection2.getShape()[0]); assert (r1.length() == Asection2.getShape()[1]); IndexIterator s1 = Asection.getIndexIterator(); IndexIterator s2 = Asection2.getIndexIterator(); int count = 0; while (s1.hasNext()) { double d1 = s1.getDoubleNext(); double d2 = s2.getDoubleNext(); assert Misc.closeEnough( d1, d2) : count+" "+d1 +" != "+d2; count++; } ncfile.close(); System.out.println( "*** testReadVariableSection2 done"); } }