/* * Copyright 1998-2014 University Corporation for Atmospheric Research/Unidata * * Portions of this software were developed by the Unidata Program at the * University Corporation for Atmospheric Research. * * Access and use of this software shall impose the following obligations * and understandings on the user. The user is granted the right, without * any fee or cost, to use, copy, modify, alter, enhance and distribute * this software, and any derivative works thereof, and its supporting * documentation for any purpose whatsoever, provided that this entire * notice appears in all copies of the software, derivative works and * supporting documentation. Further, UCAR requests that the user credit * UCAR/Unidata in any publications that result from the use of this * software or in any product that includes this software. The names UCAR * and/or Unidata, however, may not be used in any advertising or publicity * to endorse or promote any products or commercial entity unless specific * written permission is obtained from UCAR/Unidata. The user also * understands that UCAR/Unidata is not obligated to provide the user with * any support, consulting, training or assistance of any kind with regard * to the use, operation and performance of this software nor to provide * the user with any updates, revisions, new versions or "bug fixes." * * THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE * DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL, * INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING * FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, * NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION * WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE. */ package ucar.nc2.iosp; import ucar.ma2.Index; import ucar.ma2.Section; import ucar.ma2.InvalidRangeException; /** * LayoutSegmented has data stored in segments. * Assume that each segment size is a multiple of elemSize. * * @author caron * @since Dec 31, 2007 */ public class LayoutSegmented implements Layout { private long total, done; private int elemSize; // size of each element private long[] segPos; // bytes private long[] segMax, segMin; // bytes // outer chunk private IndexChunker chunker; private IndexChunker.Chunk chunkOuter; // inner chunk = deal with segmentation private IndexChunker.Chunk chunkInner = new IndexChunker.Chunk(0,0,0); private static final boolean debugNext = false; /** * Constructor. * * @param segPos starting address of each segment. * @param segSize number of bytes in each segment. Assume multiple of elemSize * @param elemSize size of an element in bytes. * @param srcShape shape of the entire data array. * @param wantSection the wanted section of data * @throws ucar.ma2.InvalidRangeException if ranges are misformed */ public LayoutSegmented(long[] segPos, int[] segSize, int elemSize, int[] srcShape, Section wantSection) throws InvalidRangeException { assert segPos.length == segSize.length; this.segPos = segPos; int nsegs = segPos.length; segMin = new long[nsegs]; segMax = new long[nsegs]; long totalElems = 0; for (int i = 0; i < nsegs; i++) { assert segPos[i] >= 0; assert segSize[i] > 0; assert (segSize[i] % elemSize) == 0; segMin[i] = totalElems; totalElems += segSize[i]; segMax[i] = totalElems; } assert totalElems >= Index.computeSize(srcShape) * elemSize; chunker = new IndexChunker(srcShape, wantSection); this.total = chunker.getTotalNelems(); this.done = 0; this.elemSize = elemSize; } public long getTotalNelems() { return total; } public int getElemSize() { return elemSize; } public boolean hasNext() { return done < total; } /////////////////// private long getFilePos(long elem) { int segno = 0; while (elem >= segMax[segno]) segno++; return segPos[segno] + elem - segMin[segno]; } // how many more bytes are in this segment ? private int getMaxBytes(long start) { int segno = 0; while (start >= segMax[segno]) segno++; return (int) (segMax[segno] - start); } private int needInner = 0; private int doneInner = 0; public Chunk next() { Chunk result; if (needInner > 0) { result = nextInner(false, 0); } else { result = nextOuter(); int nbytes = getMaxBytes( chunkOuter.getSrcElem() * elemSize); if (nbytes < result.getNelems() * elemSize) result = nextInner(true, nbytes); } done += result.getNelems(); doneInner += result.getNelems(); needInner -= result.getNelems(); if (debugNext) System.out.println(" next chunk: " + result); return result; } private Chunk nextInner(boolean first, int nbytes) { if (first) { chunkInner.setNelems(nbytes / elemSize); chunkInner.setDestElem( chunkOuter.getDestElem()); needInner = chunkOuter.getNelems(); doneInner = 0; } else { chunkInner.incrDestElem( chunkInner.getNelems()); // increment using last chunks' value nbytes = getMaxBytes( (chunkOuter.getSrcElem() + doneInner) * elemSize); nbytes = Math.min(nbytes, needInner * elemSize); chunkInner.setNelems(nbytes / elemSize); // set this chunk's value } chunkInner.setSrcPos( getFilePos( (chunkOuter.getSrcElem() + doneInner) * elemSize)); return chunkInner; } public Chunk nextOuter() { chunkOuter = chunker.next(); long srcPos = getFilePos( chunkOuter.getSrcElem() * elemSize); chunkOuter.setSrcPos( srcPos); return chunkOuter; } }