/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.nbio.ws.hmmer;
import org.biojava.nbio.core.sequence.ProteinSequence;
import java.io.IOException;
import java.util.SortedSet;
/** Interface for performing Hmmscans on sequences.
*
* @author Andreas Prlic
* @since 3.0.3
*/
public interface HmmerScan {
public SortedSet<HmmerResult> scan(ProteinSequence sequence) throws IOException;
}