/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
* Created on Mar 1, 2010
* Author: Andreas Prlic
*
*/
package org.biojava.nbio.structure.align;
import junit.framework.TestCase;
public class TestAlignDBSearchPairs extends TestCase
{
public void testNothing(){
}
// speedup... nothing new being tested here, so disabling for now
// public void testParsePairs(){
//
// String tmpDir = System.getProperty("java.io.tmpdir");
//
// AtomCache cache = new AtomCache(tmpDir,true);
//
// InputStream inStream = this.getClass().getResourceAsStream("/db_search.pairs");
// assertNotNull(inStream);
//
// BufferedReader is = new BufferedReader (new InputStreamReader(inStream)) ;
// try {
// StructureAlignment algorithm = StructureAlignmentFactory.getAlgorithm(CeMain.algorithmName);
// String line = null;
// while ( (line = is.readLine()) != null){
// if ( line.startsWith("#"))
// continue;
// // System.out.println("aligning: " + line);
// String[] spl = line.split(" ");
// String pdb1 = spl[0];
// String pdb2 = spl[1];
//
//
// Structure structure1 = cache.getStructure(pdb1);
// Structure structure2 = cache.getStructure(pdb2);
//
// Atom[] ca1;
// Atom[] ca2;
//
//
// ca1 = StructureTools.getAtomCAArray(structure1);
// ca2 = StructureTools.getAtomCAArray(structure2);
//
// algorithm.align(ca1,ca2);
//
// }
// } catch (Exception e){
// e.printStackTrace();
// fail(e.getMessage());
// }
// }
}