/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
* Created on 2012-02-11
*
*/
package org.biojava.nbio.ws.alignment.qblast;
/**
* Alignment request parameters accepted by QBlast service.<br/>
* Not all are mandatory. Certain parameters only work with a subset of other parameters in the list.
* <p/>
* Taken from <a href=https://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/new/node9.html>Blast URL API</a>
*
* @author Gediminas Rimsa
*/
public enum BlastAlignmentParameterEnum {
CMD,
TOOL,
EMAIL,
ALIGNMENTS,
BLAST_PROGRAM,
CDD_SEARCH,
COMPOSITION_BASED_STATISTICS,
DATABASE_PREFIX,
DATABASE,
DB_GENETIC_CODE,
DESCRIPTIONS,
ENTREZ_QUERY,
EXPECT,
FILTER,
FIRST_QUERY_NUM,
GAPCOSTS,
GENETIC_CODE,
HITLIST_SIZE,
I_THRESH,
LCASE_MASK,
MATCH_SCORES,
MATRIX_NAME,
MAX_NUM_SEQ,
MEGABLAST,
NUM_OVERVIEW,
OTHER_ADVANCED,
PERC_IDENT,
PHI_PATTERN,
PROGRAM,
PSSM,
QUERY,
QUERY_BELIEVE_DEFLINE,
QUERY_FROM,
QUERY_TO,
REPEATS,
SHORT_QUERY_ADJUST,
SEARCHSP_EFF,
TEMPLATE_LENTH,
TEMPLATE_TYPE,
THRESHOLD,
TWO_HITS,
WORD_SIZE,
WWW_BLAST_TYPE
}