/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
* Created on Jan 21, 2010
*
*/
package org.biojava.nbio.structure.gui;
import junit.framework.TestCase;
import org.biojava.nbio.structure.align.gui.jmol.AtomInfo;
public class TestAtomInfo extends TestCase {
public void testAtomInfoConversion(){
String s1 = "[MET]508:A.CA/1 #3918";
AtomInfo aa = AtomInfo.fromString(s1);
assertTrue(aa.getAtomName().equals("CA"));
assertEquals(aa.getChainId(),"A");
assertEquals(aa.getModelNumber(),1);
assertEquals(aa.getResidueName(),"MET");
assertEquals(aa.getResidueNumber(), "508");
String s1New = aa.toString();
// atom nr not supported yet
assertEquals("[MET]508:A.CA/1",s1New);
}
public void testInsertionCode(){
String s1 = "[ASP]1^A:A.CA/2 #2";
AtomInfo aa = AtomInfo.fromString(s1);
assertEquals(aa.getAtomName(), "CA");
assertEquals(aa.getChainId(),"A");
assertEquals(aa.getModelNumber(),2);
assertEquals(aa.getResidueName(),"ASP");
assertEquals(aa.getResidueNumber(), "1A");
assertEquals("[ASP]1^A:A.CA/2",aa.toString());
}
}