/** * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * * Created on Aug 31, 2011 * Created by Andreas Prlic * * @since 3.0.2 */ package org.biojava.nbio.structure.xtal.io; import org.biojava.nbio.structure.xtal.SpaceGroup; import javax.xml.bind.JAXBContext; import javax.xml.bind.JAXBException; import javax.xml.bind.Marshaller; import javax.xml.bind.Unmarshaller; import javax.xml.bind.annotation.XmlAccessType; import javax.xml.bind.annotation.XmlAccessorType; import javax.xml.bind.annotation.XmlRootElement; import java.io.ByteArrayInputStream; import java.io.ByteArrayOutputStream; import java.io.PrintStream; import java.io.Serializable; import java.util.TreeMap; @XmlRootElement(name = "TreeSetSpaceGroupWrapper", namespace ="http://www.biojava.org") @XmlAccessorType(XmlAccessType.PUBLIC_MEMBER) public class TreeMapSpaceGroupWrapper implements Serializable{ private static final long serialVersionUID = 4193799052494327416L; private TreeMap<Integer,SpaceGroup> data; public TreeMapSpaceGroupWrapper(){ data = new TreeMap<Integer,SpaceGroup>(); } public TreeMap<Integer,SpaceGroup> getData() { return data; } public void setData(TreeMap<Integer,SpaceGroup> data) { this.data = data; } public String toXML() throws JAXBException{ ByteArrayOutputStream baos = new ByteArrayOutputStream(); PrintStream ps = new PrintStream(baos); JAXBContext jaxbContext = JAXBContext.newInstance(TreeMapSpaceGroupWrapper.class); Marshaller m = jaxbContext.createMarshaller(); m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE); m.marshal( this, ps); JAXBContext.newInstance(TreeMapSpaceGroupWrapper.class); return baos.toString(); } public static TreeMapSpaceGroupWrapper fromXML(String xml) throws JAXBException{ TreeMapSpaceGroupWrapper job = null; JAXBContext jaxbContext = JAXBContext.newInstance(TreeMapSpaceGroupWrapper.class); Unmarshaller un = jaxbContext.createUnmarshaller(); ByteArrayInputStream bais = new ByteArrayInputStream(xml.getBytes()); job = (TreeMapSpaceGroupWrapper) un.unmarshal(bais); return job; } }