/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ package org.biojava.nbio.structure.test; import org.biojava.nbio.structure.Chain; import org.biojava.nbio.structure.Structure; import org.biojava.nbio.structure.StructureIO; import org.biojava.nbio.structure.align.util.AtomCache; import org.biojava.nbio.structure.io.LocalPDBDirectory.FetchBehavior; import junit.framework.TestCase; public class Test1o2f extends TestCase{ private static Structure structure = null; @Override protected void setUp() throws Exception { super.setUp(); AtomCache cache = new AtomCache(); cache.setUseMmCif(true); cache.setFetchBehavior(FetchBehavior.FETCH_FILES); StructureIO.setAtomCache(cache); String pdbId = "1O2F"; structure = StructureIO.getStructure(pdbId); } public void test1a4wPDBFile(){ for(int i=0;i<structure.nrModels();i++){ for(Chain c: structure.getChains(i)){ assertNotNull(c.getName()); assertNotNull(c.getId()); } } } }