/*************************************************************************
* *
* This file is part of the 20n/act project. *
* 20n/act enables DNA prediction for synthetic biology/bioengineering. *
* Copyright (C) 2017 20n Labs, Inc. *
* *
* Please direct all queries to act@20n.com. *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
*************************************************************************/
package act.installer.sequence;
import act.server.MongoDB;
import org.biojava.nbio.core.sequence.features.Qualifier;
import org.biojava.nbio.core.sequence.template.AbstractSequence;
import java.util.List;
import java.util.Map;
public class GenbankSeqEntryFactory {
public GenbankSeqEntry createFromDNASequenceReference(AbstractSequence sequence,
Map<String, List<Qualifier>> qualifierMap, MongoDB db,
Map<String, String> minimalPrefixMapping) {
GenbankSeqEntry se = new GenbankSeqEntry(sequence, qualifierMap);
se.init(db, minimalPrefixMapping);
return se;
}
public GenbankSeqEntry createFromProteinSequenceReference(AbstractSequence sequence, MongoDB db,
Map<String, String> minimalPrefixMapping) {
GenbankSeqEntry se = new GenbankSeqEntry(sequence);
se.init(db, minimalPrefixMapping);
return se;
}
}