/*************************************************************************
* *
* This file is part of the 20n/act project. *
* 20n/act enables DNA prediction for synthetic biology/bioengineering. *
* Copyright (C) 2017 20n Labs, Inc. *
* *
* Please direct all queries to act@20n.com. *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
*************************************************************************/
package act.installer.metacyc.annotations;
import act.installer.metacyc.Resource;
import act.installer.metacyc.BPElement;
import act.installer.metacyc.OrganismComposition;
import act.installer.metacyc.JsonHelper;
import org.json.JSONObject;
public class Stoichiometry extends BPElement {
Float stoichiometricCoefficient;
Resource physicalEntity; // Protein|Complex|Rna|SmallMolecule
public Resource getPhysicalEntity() { return this.physicalEntity; }
public Float getCoefficient() { return this.stoichiometricCoefficient; }
public Stoichiometry(BPElement basics, Resource phyEnt, Float coeff) {
super(basics);
this.stoichiometricCoefficient = coeff;
this.physicalEntity = phyEnt;
}
public JSONObject expandedJSON(OrganismComposition src) {
JsonHelper o = new JsonHelper(src);
if (stoichiometricCoefficient != null) o.add("c", stoichiometricCoefficient);
if (physicalEntity != null) o.add("on", physicalEntity.toString()); // do not resolve the physical entity as this is always supposed to be a reference to the entity closely in the datastructures.
return o.getJSON();
}
}