/*************************************************************************
* *
* This file is part of the 20n/act project. *
* 20n/act enables DNA prediction for synthetic biology/bioengineering. *
* Copyright (C) 2017 20n Labs, Inc. *
* *
* Please direct all queries to act@20n.com. *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
*************************************************************************/
package act.installer.metacyc.processes;
import act.installer.metacyc.Resource;
import act.installer.metacyc.BPElement;
import act.installer.metacyc.OrganismComposition;
import act.installer.metacyc.JsonHelper;
import org.biopax.paxtools.model.level3.ControlType;
import java.util.Set;
import org.json.JSONObject;
public class Modulation extends BPElement {
ControlType controlType; // e.g., INHIBITION, fullset: Enum.values(ControlType)
Set<Resource> controller;
Set<Resource> controlled;
public Modulation(BPElement basics, ControlType ctrlt, Set<Resource> controller, Set<Resource> controlled) {
super(basics);
this.controlType = ctrlt;
this.controller = controller;
this.controlled = controlled;
}
public JSONObject json(OrganismComposition src) {
JsonHelper o = new JsonHelper(src);
o.add("type", controlType.toString());
o.add("controller", src.resolve(controller));
o.add("controlled", src.resolve(controlled));
return o.getJSON();
}
}