/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package org.broad.igv.util.stream; import htsjdk.samtools.seekablestream.ISeekableStreamFactory; import htsjdk.samtools.seekablestream.SeekableFileStream; import htsjdk.samtools.seekablestream.SeekableStream; import org.broad.igv.util.HttpUtils; import java.io.File; import java.io.IOException; import java.net.URL; /** * @author Jim Robinson */ public class IGVSeekableStreamFactory implements ISeekableStreamFactory { private static IGVSeekableStreamFactory instance; static{ instance = new IGVSeekableStreamFactory(); } private IGVSeekableStreamFactory(){} public static IGVSeekableStreamFactory getInstance(){ return instance; } public SeekableStream getStreamFor(URL url) throws IOException{ return getStreamFor(url.toExternalForm()); } public SeekableStream getStreamFor(String path) throws IOException { if (path.endsWith(".list")) { return new SeekableSplitStream(path); } else { SeekableStream is = null; if (path.toLowerCase().startsWith("http:") || path.toLowerCase().startsWith("https:")) { final URL url = new URL(path); boolean useByteRange = HttpUtils.getInstance().useByteRange(url); if (useByteRange) { is = new IGVSeekableHTTPStream(url); } else { is = new SeekableServiceStream(url); } } else if (path.toLowerCase().startsWith("ftp:")) { final URL url = new URL(path); is = new IGVSeekableFTPStream(url); } else { is = new SeekableFileStream(new File(path)); } return is; } } public SeekableStream getBufferedStream(SeekableStream stream){ return getBufferedStream(stream, IGVSeekableBufferedStream.DEFAULT_BUFFER_SIZE); } public SeekableStream getBufferedStream(SeekableStream stream, int bufferSize){ return new IGVSeekableBufferedStream(stream, bufferSize); } }