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* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
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* of this software and associated documentation files (the "Software"), to deal
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* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
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*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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package org.broad.igv.data;
import org.broad.igv.track.TrackProperties;
import org.broad.igv.track.TrackType;
/**
* A dataset is an in-memory representation of a numerical dataset. It is used for non-indexed data formats that are
* read into memory as opposed to read off disk as needed. The use of objects is eschewed in favor of simple arrays
* to minimize memory.
*
*
* @author jrobinso
*/
public interface Dataset {
public String getName();
public TrackType getType();
public TrackProperties getTrackProperties();
public float getDataMin();
public float getDataMax();
public String[] getChromosomes();
public String[] getTrackNames();
public int[] getStartLocations(String chr);
public int[] getEndLocations(String chr);
public String[] getFeatureNames(String chr);
public float[] getData(String trackName, String chr);
public boolean isLogNormalized();
Integer getLongestFeature(String chr);
}