/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* Created by JFormDesigner on Wed Apr 11 16:44:25 EDT 2012
*/
package org.broad.igv.feature.genome;
import org.broad.igv.prefs.PreferencesManager;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.util.FileDialogUtils;
import org.broad.igv.ui.util.MessageUtils;
import javax.swing.*;
import javax.swing.border.EmptyBorder;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.io.File;
/**
* @author Stan Diamond
*/
public class GenomeBuilderDialog extends JDialog {
boolean canceled;
File archiveFile;
public GenomeBuilderDialog(Frame owner, IGV igv) {
super(owner, "Create .genome file");
setModal(true);
initComponents();
this.panel1.setIgv(igv);
}
public boolean isCanceled() {
return canceled;
}
public File getArchiveFile() {
return archiveFile;
}
private void okButtonActionPerformed(ActionEvent e) {
boolean valid = validateFields();
if (valid) {
archiveFile = chooseArchiveFile();
canceled = (archiveFile == null);
setVisible(false);
dispose();
}
}
private void cancelButtonActionPerformed(ActionEvent e) {
canceled = true;
setVisible(false);
dispose();
}
private File chooseArchiveFile() {
File dir = PreferencesManager.getPreferences().getLastGenomeImportDirectory();
File initFile = new File(getGenomeId() + ".genome");
return FileDialogUtils.chooseFile("Save .genome file", dir, initFile, FileDialog.SAVE);
}
private boolean validateFields() {
StringBuffer errors = new StringBuffer();
String id = getGenomeId();
String name = getGenomeDisplayName();
String fastaFile = getFastaFileName();
if (id == null || id.length() == 0) {
errors.append(errors.length() == 0 ? "<html>" : "<br>");
errors.append("Unique ID is required");
}
if (name == null || name.length() == 0) {
errors.append(errors.length() == 0 ? "<html>" : "<br>");
errors.append("Descriptive name is required");
}
if (fastaFile == null || fastaFile.length() == 0) {
errors.append(errors.length() == 0 ? "<html>" : "<br>");
errors.append("FASTA file is required");
}
if (errors.length() == 0) {
return true;
} else {
MessageUtils.showMessage(errors.toString());
return false;
}
}
private void initComponents() {
// JFormDesigner - Component initialization - DO NOT MODIFY //GEN-BEGIN:initComponents
// Generated using JFormDesigner non-commercial license
dialogPane = new JPanel();
contentPanel = new JPanel();
panel1 = new GenomeBuilderPane();
buttonBar = new JPanel();
okButton = new JButton();
cancelButton = new JButton();
//======== this ========
Container contentPane = getContentPane();
contentPane.setLayout(new BorderLayout());
//======== dialogPane ========
{
dialogPane.setBorder(new EmptyBorder(12, 12, 12, 12));
dialogPane.setLayout(new BorderLayout());
//======== contentPanel ========
{
contentPanel.setLayout(new BorderLayout());
contentPanel.add(panel1, BorderLayout.CENTER);
}
dialogPane.add(contentPanel, BorderLayout.CENTER);
//======== buttonBar ========
{
buttonBar.setBorder(new EmptyBorder(12, 0, 0, 0));
buttonBar.setLayout(new GridBagLayout());
((GridBagLayout) buttonBar.getLayout()).columnWidths = new int[]{0, 85, 80};
((GridBagLayout) buttonBar.getLayout()).columnWeights = new double[]{1.0, 0.0, 0.0};
//---- okButton ----
okButton.setText("OK");
okButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
okButtonActionPerformed(e);
}
});
buttonBar.add(okButton, new GridBagConstraints(1, 0, 1, 1, 0.0, 0.0,
GridBagConstraints.CENTER, GridBagConstraints.BOTH,
new Insets(0, 0, 0, 5), 0, 0));
//---- cancelButton ----
cancelButton.setText("Cancel");
cancelButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
cancelButtonActionPerformed(e);
}
});
buttonBar.add(cancelButton, new GridBagConstraints(2, 0, 1, 1, 0.0, 0.0,
GridBagConstraints.CENTER, GridBagConstraints.BOTH,
new Insets(0, 0, 0, 0), 0, 0));
}
dialogPane.add(buttonBar, BorderLayout.SOUTH);
}
contentPane.add(dialogPane, BorderLayout.CENTER);
setSize(870, 430);
setLocationRelativeTo(getOwner());
// JFormDesigner - End of component initialization //GEN-END:initComponents
}
// JFormDesigner - Variables declaration - DO NOT MODIFY //GEN-BEGIN:variables
// Generated using JFormDesigner non-commercial license
private JPanel dialogPane;
private JPanel contentPanel;
private GenomeBuilderPane panel1;
private JPanel buttonBar;
private JButton okButton;
private JButton cancelButton;
// JFormDesigner - End of variables declaration //GEN-END:variables
public String getCytobandFileName() {
return panel1.getCytobandFileName();
}
public String getGeneAnnotFileName() {
return panel1.getGeneAnnotFileName();
}
public String getFastaFileName() {
return panel1.getFastaFileName();
}
public String getChrAliasFileName() {
return panel1.getChrAliasFileName();
}
public String getGenomeDisplayName() {
return panel1.getGenomeDisplayName();
}
public String getGenomeId() {
return panel1.getGenomeId();
}
public String getArchiveFileName() {
return panel1.getArchiveFileName();
}
}