/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package org.broad.igv.data;
import org.broad.igv.feature.LocusScore;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
/**
* Represents a chunk of data over a fixed window span (default == 1)
*
* @version 1.0
* @created 13-Nov-2007 13:11:15
*/
public class SummaryTile2D {
/**
* The tileNumber. Used to support unit tests, and general debugging
*/
private int tileNumber;
private int startLocation;
Map<Integer, List<LocusScore>> summaryScores;
public SummaryTile2D(int tileNumber, int startLocation) {
this.tileNumber = tileNumber;
this.startLocation = startLocation;
summaryScores = new HashMap();
}
public void addScore(int trackNumber, LocusScore score) {
List<LocusScore> scoreList = summaryScores.get(trackNumber);
if (scoreList == null) {
scoreList = new ArrayList();
summaryScores.put(trackNumber, scoreList);
}
scoreList.add(score);
}
public List<LocusScore> getScores(int trackNumber) {
return summaryScores.get(trackNumber);
}
public Map<Integer, List<LocusScore>> getSummaryScores() {
return summaryScores;
}
public int getSize() {
return summaryScores.size();
}
public boolean isEmpty() {
return summaryScores.isEmpty();
}
public int getStartLocation() {
return startLocation;
}
}