/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package org.broad.igv.data.seg;
import org.broad.igv.data.BasicScore;
import org.broad.igv.track.WindowFunction;
/**
* @author jacob
* @date 09/01/09
*/
public class Segment extends BasicScore {
private int extendedStart = -1;
private int extendedEnd = -1;
private String description;
public Segment(int start, int end, float score) {
super(start, end, score);
if (extendedStart < 0) {
extendedStart = start;
}
if (extendedEnd < 0) {
extendedEnd = end;
}
}
public Segment(int start, int origStart, int end, int origEnd, float value, String description) {
super(start, end, value);
this.extendedStart = origStart;
this.extendedEnd = origEnd;
this.description = description;
}
public Segment copy() {
return new Segment(start, extendedStart, end, extendedEnd, score, description);
}
public String getValueString(double position, int mouseX, WindowFunction ignored) {
String valueString = "Value: " + getScore();
if (description != null) {
valueString += description;
}
return valueString;
}
public String getDescription() {
return description;
}
}