/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.data;
import org.broad.igv.track.WindowFunction;
public class DataStatistics {
private double mean;
private double median;
private double min;
private double max;
private double percentile10;
private double percentile90;
private double percentile98;
private double stdDev;
private boolean nullData = false;
public static DataStatistics nullDataStat;
static {
nullDataStat = new DataStatistics();
nullDataStat.nullData = true;
}
public double getValue(WindowFunction type) {
if (nullData) {
return Float.NaN;
}
switch (type) {
case min:
return min;
case max:
return max;
case mean:
return mean;
case median:
return median;
case percentile10:
return percentile10;
case percentile90:
return percentile90;
case stddev:
return stdDev;
}
return Float.NaN;
}
public double getMean() {
return mean;
}
public void setMean(double mean) {
this.mean = mean;
}
public double getMedian() {
return median;
}
public void setMedian(double median) {
this.median = median;
}
public double getMax() {
return max;
}
public void setMax(double max) {
this.max = max;
}
public double getPercentile90() {
return percentile90;
}
public void setPercentile90(double percentile90) {
this.percentile90 = percentile90;
}
public double getPercentile10() {
return percentile10;
}
public void setPercentile10(double percentile10) {
this.percentile10 = percentile10;
}
public double getStdDev() {
return stdDev;
}
public void setStdDev(double stdDev) {
this.stdDev = stdDev;
}
public double getPercentile98() {
return percentile98;
}
public void setPercentile98(double percentile98) {
this.percentile98 = percentile98;
}
public double getMin() {
return min;
}
public void setMin(double min) {
this.min = min;
}
}