/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.data;
import org.broad.igv.feature.LocusScore;
import org.broad.igv.track.WindowFunction;
/**
* @author jrobinso
*/
public class SummaryScore implements LocusScore {
int start;
int end;
float value;
public SummaryScore(int start, int end, float value) {
this.start = start;
this.end = end;
this.value = value;
}
public SummaryScore(LocusScore anotherScore) {
this.start = anotherScore.getStart();
this.end = anotherScore.getEnd();
this.value = anotherScore.getScore();
}
public SummaryScore copy() {
return new SummaryScore(this);
}
public void setStart(int start) {
this.start = start;
}
public String getChr() {
return null; //To change body of implemented methods use File | Settings | File Templates.
}
@Override
public String getContig() {
return null;
}
public int getStart() {
return start;
}
public int getEnd() {
return end;
}
public void setEnd(int end) {
this.end = end;
}
public float getValue() {
return value;
}
public void setScore(float score) {
this.value = score;
}
public float getScore() {
return value;
}
public String getValueString(double position, int mouseX, WindowFunction wf) {
return "Value: " + getScore() + (wf == null ? "" : " (" + wf.toString() + ")");
}
}