/*
* PairDistance.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.oldevomodel.sitemodel;
import java.util.List;
/**
* @author alexei
* @version $Id: PairDistance.java,v 1.2 2005/04/11 11:29:37 alexei Exp $
*/
public class PairDistance implements Comparable<PairDistance> {
int x, y;
double distance;
List<Integer> gaps = null;
int alignmentLength;
public PairDistance(int x, int y, double distance, List<Integer> gaps, int alignmentLength) {
this.x = x;
this.y = y;
this.distance = distance;
this.gaps = gaps;
this.alignmentLength = alignmentLength;
}
public int compareTo(PairDistance p) {
if (p.distance > distance) return -1;
if (p.distance < distance) return 1;
return 0;
}
}