/* * RatioStatisticParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.model; import dr.inference.model.RatioStatistic; import dr.inference.model.Statistic; import dr.xml.*; /** */ public class RatioStatisticParser extends AbstractXMLObjectParser { public static String RATIO_STATISTIC = "ratioStatistic"; public static String RATIO = "ratio"; public String[] getParserNames() { return new String[] { getParserName(), RATIO}; } public String getParserName() { return RATIO_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { Statistic numerator = (Statistic)xo.getChild(0); Statistic denominator = (Statistic)xo.getChild(1); RatioStatistic ratioStatistic; try { ratioStatistic = new RatioStatistic(RATIO_STATISTIC, numerator, denominator); } catch (IllegalArgumentException iae) { throw new XMLParseException("Error parsing " + getParserName() + " the numerator and denominator statistics " + "should be of the same dimension or of dimension 1"); } return ratioStatistic; } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a statistic that is the ratio of the 2 child statistics."; } public Class getReturnType() { return RatioStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(Statistic.class, "The two operand statistics", 2, 2) }; }