/*
* CountableRealizationsParameterParser.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.branchmodel.lineagespecific;
import dr.inference.model.CompoundParameter;
import dr.inference.model.Parameter;
import dr.xml.AbstractXMLObjectParser;
import dr.xml.ElementRule;
import dr.xml.XMLObject;
import dr.xml.XMLParseException;
import dr.xml.XMLSyntaxRule;
/**
*/
public class CountableRealizationsParameterParser extends
AbstractXMLObjectParser {
public static final String COUNTABLE_REALIZATIONS_PARAMETER = "countableRealizationsParameter";
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
Parameter categoriesParameter = (Parameter) xo .getElementFirstChild(DirichletProcessPriorParser.CATEGORIES);
CompoundParameter realizedParameters = (CompoundParameter) xo .getChild(CompoundParameter.class);
return new CountableRealizationsParameter(categoriesParameter,
realizedParameters);
}
public XMLSyntaxRule[] getSyntaxRules() {
return new XMLSyntaxRule[] {
new ElementRule(DirichletProcessPriorParser.CATEGORIES,
new XMLSyntaxRule[] { new ElementRule(Parameter.class,
false) }), // categories assignments
new ElementRule(CompoundParameter.class, false) // realized parameters
};
}
public String getParserDescription() {
return COUNTABLE_REALIZATIONS_PARAMETER;
}
public Class getReturnType() {
return Parameter.class;
}
public String getParserName() {
return COUNTABLE_REALIZATIONS_PARAMETER;
}
}