package dr.inferencexml.operators; import dr.inference.operators.GibbsOperator; import dr.inference.operators.JointGibbsOperator; import dr.inference.operators.SimpleMCMCOperator; import dr.xml.*; /** * @author Max Tolkoff */ public class JointGibbsOperatorParser extends AbstractXMLObjectParser { public static final String JOINT_GIBBS_OPERATOR = "jointGibbsOperator"; public static final String WEIGHT = "weight"; public static final String TARGET_ACCEPTANCE = "targetAcceptance"; public String getParserName() { return JOINT_GIBBS_OPERATOR; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { final double weight = xo.getDoubleAttribute(WEIGHT); JointGibbsOperator operator = new JointGibbsOperator(weight); for (int i = 0; i < xo.getChildCount(); i++) { if (xo.getChild(i) instanceof GibbsOperator) operator.addOperator((SimpleMCMCOperator) xo.getChild(i)); else throw new RuntimeException("Operator list must consist only of GibbsOperators"); } return operator; } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element represents a list of Gibbs Operators"; } public Class getReturnType() { return JointGibbsOperator.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(SimpleMCMCOperator.class, 1, Integer.MAX_VALUE), AttributeRule.newDoubleRule(WEIGHT), AttributeRule.newDoubleRule(TARGET_ACCEPTANCE, true) }; }