/* * FullyConjugateTreeTipsPotentialDerivativeParser.java * * Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml.continuous.hmc; import dr.evomodel.continuous.FullyConjugateMultivariateTraitLikelihood; import dr.evomodel.continuous.hmc.FullyConjugateTreeTipsPotentialDerivative; import dr.xml.*; /** * @author Max Tolkoff */ public class FullyConjugateTreeTipsPotentialDerivativeParser extends AbstractXMLObjectParser { public final static String FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE = "fullyConjugateTreeTipsPotentialDerivative"; public final static String FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE2 = "traitGradientOnTree"; @Override public String getParserName() { return FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE; } @Override public String[] getParserNames() { return new String[] { FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE, FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE2 }; } @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { FullyConjugateMultivariateTraitLikelihood treeLikelihood = (FullyConjugateMultivariateTraitLikelihood) xo.getChild(FullyConjugateMultivariateTraitLikelihood.class); return new FullyConjugateTreeTipsPotentialDerivative(treeLikelihood); } @Override public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(FullyConjugateMultivariateTraitLikelihood.class), }; @Override public String getParserDescription() { return null; } @Override public Class getReturnType() { return FullyConjugateTreeTipsPotentialDerivative.class; } }