/* * PowerLawGrowthModelParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml.coalescent; import dr.evolution.util.Units; import dr.evomodel.coalescent.ExponentialGrowthModel; import dr.evomodel.coalescent.PowerLawGrowthModel; import dr.evoxml.util.XMLUnits; import dr.inference.model.Parameter; import dr.xml.*; /** * Parses an element from an DOM document into a ExponentialGrowth. */ public class PowerLawGrowthModelParser extends AbstractXMLObjectParser { public static String N0 = "n0"; public static String POWER_LAW_GROWTH_MODEL = "powerLawGrowth"; public static String POWER = "power"; public String getParserName() { return POWER_LAW_GROWTH_MODEL; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { Units.Type units = XMLUnits.Utils.getUnitsAttr(xo); XMLObject cxo = xo.getChild(N0); Parameter N0Param = (Parameter) cxo.getChild(Parameter.class); Parameter rParam; cxo = xo.getChild(POWER); rParam = (Parameter) cxo.getChild(Parameter.class); return new PowerLawGrowthModel(N0Param, rParam, units); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "A demographic model of growth according to a power law."; } public Class getReturnType() { return PowerLawGrowthModel.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ new ElementRule(N0, new XMLSyntaxRule[]{new ElementRule(Parameter.class)}), new ElementRule(POWER, new XMLSyntaxRule[]{new ElementRule(Parameter.class)}), XMLUnits.SYNTAX_RULES[0] }; }