/* * TraceFactory.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inference.trace; /** * The trace type to determine what statistics * * @author Alexei Drummond * @author Walter Xie * @author Andrew Rambaut */ public enum TraceType { // changed this to 'real' as this is less Comp Sci. than 'double' REAL("real", "R", Double.class), INTEGER("integer", "I", Integer.class), CATEGORICAL("categorical", "C", String.class), BINARY("binary", "B", Integer.class); TraceType(String name, String brief, Class type) { this.name = name; this.brief = brief; this.type = type; } public String toString() { return name; } public String getBrief() { return brief; } private Class getTypeClass() { return type; } public boolean isContinuous() { return getTypeClass() == Double.class; } /** * is the data type numerical * @return */ public boolean isNumber() { return getTypeClass() == Double.class || getTypeClass() == Integer.class; } /** * is the datatype ordinal (integer or binary) * @return */ public boolean isInteger() { return getTypeClass() == Integer.class; } /** * is the datatype discrete (ordinal or categorical) * @return */ public boolean isDiscrete() { return isInteger() || isCategorical(); } /** * is the datatype binary * @return */ public boolean isBinary() { return this == BINARY; } public boolean isIntegerOrBinary() { return isInteger() || isBinary(); } /** * is the datatype categorical * @return */ public boolean isCategorical() { return getTypeClass() == String.class; } private final String name; private final String brief; private final Class type; }