/* * BitMoveOperatorParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.operators; import dr.inference.model.Parameter; import dr.inference.operators.BitMoveOperator; import dr.inference.operators.MCMCOperator; import dr.xml.*; /** * */ public class BitMoveOperatorParser extends AbstractXMLObjectParser { public static final String BIT_MOVE_OPERATOR = "bitMoveOperator"; public static final String NUM_BITS_TO_MOVE = "numBitsToMove"; public String getParserName() { return BIT_MOVE_OPERATOR; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { double weight = xo.getDoubleAttribute(MCMCOperator.WEIGHT); int numBitsToMove = xo.getIntegerAttribute(NUM_BITS_TO_MOVE); Parameter bitsParameter = (Parameter) xo.getElementFirstChild("bits"); Parameter valuesParameter = null; if (xo.hasChildNamed("values")) { valuesParameter = (Parameter) xo.getElementFirstChild("values"); } return new BitMoveOperator(bitsParameter, valuesParameter, numBitsToMove, weight); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a bit-move operator on a given parameter."; } public Class getReturnType() { return BitMoveOperator.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ AttributeRule.newDoubleRule(MCMCOperator.WEIGHT), AttributeRule.newIntegerRule(NUM_BITS_TO_MOVE), new ElementRule("bits", Parameter.class), new ElementRule("values", Parameter.class, "values parameter", true) }; }