/*
* AbstractDistributionLikelihood.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inference.distribution;
import dr.inference.model.Likelihood;
import dr.inference.model.Model;
import dr.util.Attribute;
import java.util.ArrayList;
import java.util.List;
/**
* @author Andrew Rambaut
* @author Alexei Drummond
* @version $Id: AbstractDistributionLikelihood.java,v 1.4 2005/05/24 20:25:59 rambaut Exp $
*/
public abstract class AbstractDistributionLikelihood extends Likelihood.Abstract {
public AbstractDistributionLikelihood(Model model) {
super(model);
}
/**
* Adds a statistic, this is the data for which the likelihood is calculated.
*
* @param data to add
*/
public void addData(Attribute<double[]> data) {
dataList.add(data);
}
protected ArrayList<Attribute<double[]>> dataList = new ArrayList<Attribute<double[]>>();
public abstract double calculateLogLikelihood();
/**
* Overridden to always return false.
*/
protected boolean getLikelihoodKnown() {
return false;
}
public List<Attribute<double[]>> getDataList() {
return dataList;
}
}