/*
* CompleteHistoryLoggerParser.java
*
* Copyright (c) 2002-2016 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodelxml.treelikelihood;
import dr.evomodel.treelikelihood.MarkovJumpsTraitProvider;
import dr.evomodel.treelikelihood.utilities.CompleteHistoryLogger;
import dr.evomodel.treelikelihood.utilities.HistoryFilter;
import dr.inference.loggers.Logger;
import dr.xml.*;
/**
* @author Marc A. Suchard
* @author Philippe Lemey
*/
public class CompleteHistoryLoggerParser extends AbstractXMLObjectParser {
public static final String NAME = "completeHistoryLogger";
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
MarkovJumpsTraitProvider treeLikelihood =
(MarkovJumpsTraitProvider) xo.getChild(MarkovJumpsTraitProvider.class);
HistoryFilter filter = (HistoryFilter) xo.getChild(HistoryFilter.class);
return new CompleteHistoryLogger(treeLikelihood, filter);
}
public String getParserName() {
return NAME;
}
public String getParserDescription() {
return "A logger to record all transitions in the complete history.";
}
public Class getReturnType() {
return Logger.class;
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
new ElementRule(MarkovJumpsTraitProvider.class),
new ElementRule(HistoryFilter.class, true),
};
}