/* * TreeShapeStatisticParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml.tree; import dr.evomodel.tree.TreeModel; import dr.evomodel.tree.TreeShapeStatistic; import dr.inference.model.Statistic; import dr.xml.*; /** */ public class TreeShapeStatisticParser extends AbstractXMLObjectParser { public static final String TREE_SHAPE_STATISTIC = "treeShapeStatistics"; public static final String TARGET = "target"; public String getParserName() { return TREE_SHAPE_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { String name = xo.getAttribute(Statistic.NAME, xo.getId()); TreeModel target = (TreeModel) xo.getElementFirstChild(TARGET); return new TreeShapeStatistic(name, target); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "A statistic that reports a handful of tree shape statistics on the given target tree."; } public Class getReturnType() { return TreeShapeStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ new StringAttributeRule(Statistic.NAME, "A name for this statistic primarily for the purposes of logging", true), new ElementRule(TARGET, new XMLSyntaxRule[]{new ElementRule(TreeModel.class)}) }; }