/* * TipStateSwapOperatorParser.java * * Copyright (c) 2002-2016 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml.operators; import dr.evomodel.operators.TipStateSwapOperator; import dr.evomodel.treelikelihood.AncestralStateBeagleTreeLikelihood; import dr.xml.*; /** * @author Marc A. Suchard */ public class TipStateSwapOperatorParser extends AbstractXMLObjectParser { public String getParserName() { return TipStateSwapOperator.TIP_STATE_OPERATOR; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { AncestralStateBeagleTreeLikelihood treeLikelihood = (AncestralStateBeagleTreeLikelihood) xo.getChild(AncestralStateBeagleTreeLikelihood.class); final double weight = xo.getDoubleAttribute("weight"); return new TipStateSwapOperator(treeLikelihood, weight); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element represents an operator to swap tip states between two random tips."; } public Class getReturnType() { return TipStateSwapOperator.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { AttributeRule.newDoubleRule("weight"), new ElementRule(AncestralStateBeagleTreeLikelihood.class), }; }