/* * RapidMiner * * Copyright (C) 2001-2008 by Rapid-I and the contributors * * Complete list of developers available at our web site: * * http://rapid-i.com * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see http://www.gnu.org/licenses/. */ package com.rapidminer.operator.features.construction; import java.util.List; import com.rapidminer.example.ExampleSet; import com.rapidminer.generator.FeatureGenerator; import com.rapidminer.operator.OperatorDescription; import com.rapidminer.operator.features.PopulationOperator; import com.rapidminer.operator.features.selection.SelectionMutation; import com.rapidminer.parameter.ParameterType; import com.rapidminer.parameter.ParameterTypeDouble; import com.rapidminer.parameter.ParameterTypeInt; import com.rapidminer.parameter.UndefinedParameterError; /** * In contrast to the class * {@link com.rapidminer.operator.features.selection.GeneticAlgorithm}, the * {@link GeneratingGeneticAlgorithm} generates new attributes and thus can * change the length of an individual. Therfore specialized mutation and * crossover operators are being applied. Generators are chosen at random from a * list of generators specified by boolean parameters. <br/> * * Since this operator does not contain algorithms to extract features from * value series, it is restricted to example sets with only single attributes. * For automatic feature extraction from values series the value series plugin * for RapidMiner written by Ingo Mierswa should be used. It is available at <a * href="http://rapid-i.com">http://rapid-i.com</a> * * @rapidminer.reference Ritthoff/etal/2001a * @author Ingo Mierswa, Simon Fischer * @version $Id: GeneratingGeneticAlgorithm.java,v 1.2 2006/04/14 13:05:28 * ingomierswa Exp $ */ public class GeneratingGeneticAlgorithm extends AbstractGeneratingGeneticAlgorithm { /** The parameter name for "Max number of attributes to generate for an individual in one generation." */ public static final String PARAMETER_MAX_NUMBER_OF_NEW_ATTRIBUTES = "max_number_of_new_attributes"; /** The parameter name for "Max total number of attributes in all generations (-1: no maximum)." */ public static final String PARAMETER_MAX_TOTAL_NUMBER_OF_ATTRIBUTES = "max_total_number_of_attributes"; /** The parameter name for "Probability for an individual to be selected for generation." */ public static final String PARAMETER_P_GENERATE = "p_generate"; /** The parameter name for "Probability for an attribute to be changed (-1: 1 / numberOfAtts)." */ public static final String PARAMETER_P_MUTATION = "p_mutation"; public GeneratingGeneticAlgorithm(OperatorDescription description) { super(description); } /** * Returns an operator that performs the mutation. Can be overridden by * subclasses. */ protected PopulationOperator getMutationPopulationOperator(ExampleSet eSet) throws UndefinedParameterError { double pMutation = getParameterAsDouble(PARAMETER_P_MUTATION); return new SelectionMutation(pMutation, getRandom(), 1, getParameterAsInt(PARAMETER_MAX_TOTAL_NUMBER_OF_ATTRIBUTES), -1); } /** Returns a specialized mutation, i.e. a <code>AttributeGenerator</code> */ protected PopulationOperator getGeneratingPopulationOperator(ExampleSet eSet) throws UndefinedParameterError { List<FeatureGenerator> generators = getGenerators(); if (generators.size() == 0) { logWarning("No FeatureGenerators specified for " + getName() + "."); } int noOfNewAttributes = getParameterAsInt(PARAMETER_MAX_NUMBER_OF_NEW_ATTRIBUTES); int totalNoOfNewAttributes = getParameterAsInt(PARAMETER_MAX_TOTAL_NUMBER_OF_ATTRIBUTES); double pGenerate = getParameterAsDouble(PARAMETER_P_GENERATE); return new AttributeGenerator(pGenerate, noOfNewAttributes, totalNoOfNewAttributes, generators, getRandom()); } public List<ParameterType> getParameterTypes() { List<ParameterType> types = super.getParameterTypes(); ParameterType type = new ParameterTypeInt(PARAMETER_MAX_NUMBER_OF_NEW_ATTRIBUTES, "Max number of attributes to generate for an individual in one generation.", 0, Integer.MAX_VALUE, 1); type.setExpert(false); types.add(type); type = new ParameterTypeInt(PARAMETER_MAX_TOTAL_NUMBER_OF_ATTRIBUTES, "Max total number of attributes in all generations (-1: no maximum).", -1, Integer.MAX_VALUE, -1); type.setExpert(false); types.add(type); type = new ParameterTypeDouble(PARAMETER_P_GENERATE, "Probability for an individual to be selected for generation.", 0, 1, 0.1); type.setExpert(false); types.add(type); type = new ParameterTypeDouble(PARAMETER_P_MUTATION, "Probability for an attribute to be changed (-1: 1 / numberOfAtts).", -1.0d, 1.0d, 0.1d); type.setExpert(false); types.add(type); return types; } }