/*
* Copyright (C) 2011-2012 Dr. John Lindsay <jlindsay@uoguelph.ca>
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package plugins;
import java.util.Date;
import whitebox.geospatialfiles.WhiteboxRaster;
import whitebox.interfaces.WhiteboxPlugin;
import whitebox.interfaces.WhiteboxPluginHost;
/**
* This tool performs a percentage contrast stretch on a raster image, which maps each grid cell value in the input raster image (z) onto a new scale that ranges from a lower-tail clip value (L) to the upper-tail clip value (U), with the user-specified number of tonal values (n), such that:
zn = (z - L) / (U - L) × n where zn is the output value.
* @author Dr. John Lindsay email: jlindsay@uoguelph.ca
*/
public class PercentageContrastStretch implements WhiteboxPlugin {
private WhiteboxPluginHost myHost = null;
private String[] args;
/**
* Used to retrieve the plugin tool's name. This is a short, unique name containing no spaces.
* @return String containing plugin name.
*/
@Override
public String getName() {
return "PercentageContrastStretch";
}
/**
* Used to retrieve the plugin tool's descriptive name. This can be a longer name (containing spaces) and is used in the interface to list the tool.
* @return String containing the plugin descriptive name.
*/
@Override
public String getDescriptiveName() {
return "Percentage Contrast Stretch";
}
/**
* Used to retrieve a short description of what the plugin tool does.
* @return String containing the plugin's description.
*/
@Override
public String getToolDescription() {
return "Performs a percentage linear contrast stretch on input images.";
}
/**
* Used to identify which toolboxes this plugin tool should be listed in.
* @return Array of Strings.
*/
@Override
public String[] getToolbox() {
String[] ret = { "ImageEnhancement" };
return ret;
}
/**
* Used to communicate feedback pop-up messages between a plugin tool and the main Whitebox user-interface.
* @param feedback String containing the text to display.
*/
private void showFeedback(String feedback) {
if (myHost != null) {
myHost.showFeedback(feedback);
} else {
System.out.println(feedback);
}
}
/**
* Used to communicate a return object from a plugin tool to the main Whitebox user-interface.
* @return Object, such as an output WhiteboxRaster.
*/
private void returnData(Object ret) {
if (myHost != null) {
myHost.returnData(ret);
}
}
/**
* Used to communicate a progress update between a plugin tool and the main Whitebox user interface.
* @param progressLabel A String to use for the progress label.
* @param progress Float containing the progress value (between 0 and 100).
*/
private void updateProgress(String progressLabel, int progress) {
if (myHost != null) {
myHost.updateProgress(progressLabel, progress);
} else {
System.out.println(progressLabel + " " + progress + "%");
}
}
/**
* Used to communicate a progress update between a plugin tool and the main Whitebox user interface.
* @param progress Float containing the progress value (between 0 and 100).
*/
private void updateProgress(int progress) {
if (myHost != null) {
myHost.updateProgress(progress);
} else {
System.out.println("Progress: " + progress + "%");
}
}
/**
* Sets the arguments (parameters) used by the plugin.
* @param args An array of string arguments.
*/
@Override
public void setArgs(String[] args) {
this.args = args.clone();
}
/**
* Sets the WhiteboxPluginHost to which the plugin tool is tied. This is the class
* that the plugin will send all feedback messages, progress updates, and return objects.
* @param host The WhiteboxPluginHost that called the plugin tool.
*/
@Override
public void setPluginHost(WhiteboxPluginHost host) {
myHost = host;
}
private boolean cancelOp = false;
/**
* Used to communicate a cancel operation from the Whitebox GUI.
* @param cancel Set to true if the plugin should be canceled.
*/
@Override
public void setCancelOp(boolean cancel) {
cancelOp = cancel;
}
private void cancelOperation() {
showFeedback("Operation cancelled.");
updateProgress("Progress: ", 0);
}
private boolean amIActive = false;
/**
* Used by the Whitebox GUI to tell if this plugin is still running.
* @return a boolean describing whether or not the plugin is actively being used.
*/
@Override
public boolean isActive() {
return amIActive;
}
/**
* Used to execute this plugin tool.
*/
@Override
public void run() {
amIActive = true;
String inputFilesString = null;
String[] imageHeaders = null;
String outputHeader = null;
String outputSuffix = null;
int row, col;
double z;
double noData;
int progress;
int i, bin;
int numImages = 0;
double minVal, maxVal;
int numBins = 1024;
double clipPercentage = 1.0;
String whichTailsToClip = "both";
if (args.length <= 0) {
showFeedback("Plugin parameters have not been set.");
return;
}
inputFilesString = args[0];
outputSuffix = " " + args[1].trim().replace(".dep", "") + ".dep";
clipPercentage = Double.parseDouble(args[2]);
whichTailsToClip = args[3].toLowerCase();
numBins = Integer.parseInt(args[4]);
// check to see that the inputHeader are not null.
if ((inputFilesString == null) || (outputSuffix == null)) {
showFeedback("One or more of the input parameters have not been set properly.");
return;
}
try {
imageHeaders = inputFilesString.split(";");
numImages = imageHeaders.length;
for (i = 0; i < numImages; i++) {
WhiteboxRaster image = new WhiteboxRaster(imageHeaders[i], "r");
int nRows = image.getNumberRows();
int nCols = image.getNumberColumns();
noData = image.getNoDataValue();
double[] data = null;
// first create the histogram
double inputImageMin = image.getMinimumValue();
double inputImageMax = image.getMaximumValue();
int inputImageBins = (int)(inputImageMax - inputImageMin + 1);
double inputImageRange = inputImageMax - inputImageMin;
double[] histo = new double[inputImageBins];
for (row = 0; row < nRows; row++) {
data = image.getRowValues(row);
for (col = 0; col < nCols; col++) {
if (data[col] != noData) {
bin = (int) (data[col] - inputImageMin);
if (bin < 0) {
bin = 0;
}
if (bin > (inputImageBins - 1)) {
bin = (inputImageBins - 1);
}
histo[bin]++;
}
}
if (cancelOp) {
cancelOperation();
return;
}
progress = (int) (100f * row / (nRows - 1));
updateProgress("Calculating clip values:", progress);
}
// convert the histogram into a cumulative prob.
for (int a = 1; a < inputImageBins; a++) {
histo[a] = histo[a] + histo[a - 1];
}
// convert the histogram into a cumulative prob.
for (int a = 0; a < inputImageBins; a++) {
histo[a] = histo[a] / histo[inputImageBins - 1] * 100;
}
// find the upper and lower tails.
boolean lowerTailFound = false;
boolean upperTailFound = false;
minVal = -1;
maxVal = -1;
if (whichTailsToClip.contains("both")) {
for (int a = 1; a < inputImageBins; a++) {
if (histo[a] >= clipPercentage && !lowerTailFound) {
minVal = (a - 1 + inputImageMin) + (clipPercentage - histo[a - 1]) / (histo[a] - histo[a - 1]);
lowerTailFound = true;
}
if (histo[a] >= (100 - clipPercentage) && !upperTailFound) {
maxVal = (a - 1 + inputImageMin) + ((100 - clipPercentage) - histo[a - 1]) / (histo[a] - histo[a - 1]);
upperTailFound = true;
break;
}
}
} else if (whichTailsToClip.contains("lower")) {
for (int a = 1; a < inputImageBins; a++) {
if (histo[a] >= clipPercentage && !lowerTailFound) {
minVal = (a - 1 + inputImageMin) + (clipPercentage - histo[a - 1]) / (histo[a] - histo[a - 1]);
lowerTailFound = true;
break;
}
}
maxVal = inputImageMax;
} else {
for (int a = 1; a < inputImageBins; a++) {
if (histo[a] >= (100 - clipPercentage) && !upperTailFound) {
maxVal = (a - 1 + inputImageMin) + ((100 - clipPercentage) - histo[a - 1]) / (histo[a] - histo[a - 1]);
upperTailFound = true;
break;
}
}
minVal = inputImageMin;
}
double scaleFactor = numBins / (maxVal - minVal);
outputHeader = imageHeaders[i].replace(".dep", outputSuffix);
WhiteboxRaster output = new WhiteboxRaster(outputHeader, "rw", imageHeaders[i], WhiteboxRaster.DataType.INTEGER, noData);
output.setPreferredPalette(image.getPreferredPalette());
for (row = 0; row < nRows; row++) {
data = image.getRowValues(row);
for (col = 0; col < nCols; col++) {
if (data[col] != noData) {
z = (int) (data[col] - minVal) * scaleFactor;
if (z < 0) {
z = 0;
}
if (z > (numBins - 1)) {
z = (numBins - 1);
}
output.setValue(row, col, z);
} else {
output.setValue(row, col, noData);
}
}
if (cancelOp) {
cancelOperation();
return;
}
progress = (int) (100f * row / (nRows - 1));
updateProgress("Loop " + (i + 1) + " of " + numImages + ":", progress);
}
image.close();
output.addMetadataEntry("Created by the "
+ getDescriptiveName() + " tool.");
output.addMetadataEntry("Created on " + new Date());
output.close();
}
// returning a header file string displays the image.
returnData(outputHeader);
} catch (OutOfMemoryError oe) {
myHost.showFeedback("An out-of-memory error has occurred during operation.");
} catch (Exception e) {
myHost.showFeedback("An error has occurred during operation. See log file for details.");
myHost.logException("Error in " + getDescriptiveName(), e);
} finally {
updateProgress("Progress: ", 0);
// tells the main application that this process is completed.
amIActive = false;
myHost.pluginComplete();
}
}
// // this is only used for debugging the tool
// public static void main(String[] args) {
// PercentageContrastStretch pcs = new PercentageContrastStretch();
// args = new String[5];
// args[0] = "/Users/johnlindsay/Documents/Teaching/GEOG3420/Winter 2012/Labs/Lab5/Data/tm19920807_b1.dep;/Users/johnlindsay/Documents/Teaching/GEOG3420/Winter 2012/Labs/Lab5/Data/tm19920807_b1.dep;/Users/johnlindsay/Documents/Teaching/GEOG3420/Winter 2012/Labs/Lab5/Data/tm19920807_b3.dep";
// args[1] = "percentage stetched";
// args[2] = "2";
// args[3] = "upper";
// args[4] = "256";
//
// pcs.setArgs(args);
// pcs.run();
//
// }
}