/*
* Copyright (C) 2011-2012 Dr. John Lindsay <jlindsay@uoguelph.ca>
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package plugins;
import java.io.File;
import java.io.DataInputStream;
import java.io.BufferedReader;
import java.io.InputStreamReader;
import java.io.FileWriter;
import java.io.BufferedWriter;
import java.io.PrintWriter;
import java.util.Date;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.nio.*;
import java.nio.channels.FileChannel;
import java.io.RandomAccessFile;
import whitebox.geospatialfiles.WhiteboxRaster;
import whitebox.interfaces.WhiteboxPluginHost;
import whitebox.interfaces.WhiteboxPlugin;
import whitebox.interfaces.InteropPlugin;
/**
* This tool can be used to import IDRISI raster files (*.rdc and *.rst) to Whitebox GAT raster files.
*
* @author Dr. John Lindsay email: jlindsay@uoguelph.ca
*/
public class ImportIDRISIRaster implements WhiteboxPlugin, InteropPlugin {
private WhiteboxPluginHost myHost = null;
private String[] args;
/**
* Used to retrieve the plugin tool's name. This is a short, unique name
* containing no spaces.
*
* @return String containing plugin name.
*/
@Override
public String getName() {
return "ImportIDRISIRaster";
}
/**
* Used to retrieve the plugin tool's descriptive name. This can be a longer
* name (containing spaces) and is used in the interface to list the tool.
*
* @return String containing the plugin descriptive name.
*/
@Override
public String getDescriptiveName() {
return "Import IDRISI Raster (.rst)";
}
/**
* Used to retrieve a short description of what the plugin tool does.
*
* @return String containing the plugin's description.
*/
@Override
public String getToolDescription() {
return "Imports an IDRISI binary grid file (.rdc and .rst).";
}
/**
* Used to identify which toolboxes this plugin tool should be listed in.
*
* @return Array of Strings.
*/
@Override
public String[] getToolbox() {
String[] ret = {"IOTools"};
return ret;
}
/**
* Sets the WhiteboxPluginHost to which the plugin tool is tied. This is the
* class that the plugin will send all feedback messages, progress updates,
* and return objects.
*
* @param host The WhiteboxPluginHost that called the plugin tool.
*/
@Override
public void setPluginHost(WhiteboxPluginHost host) {
myHost = host;
}
/**
* Used to communicate feedback pop-up messages between a plugin tool and
* the main Whitebox user-interface.
*
* @param feedback String containing the text to display.
*/
private void showFeedback(String message) {
if (myHost != null) {
myHost.showFeedback(message);
} else {
System.out.println(message);
}
}
/**
* Used to communicate a return object from a plugin tool to the main
* Whitebox user-interface.
*
* @return Object, such as an output WhiteboxRaster.
*/
private void returnData(Object ret) {
if (myHost != null) {
myHost.returnData(ret);
}
}
private int previousProgress = 0;
private String previousProgressLabel = "";
/**
* Used to communicate a progress update between a plugin tool and the main
* Whitebox user interface.
*
* @param progressLabel A String to use for the progress label.
* @param progress Float containing the progress value (between 0 and 100).
*/
private void updateProgress(String progressLabel, int progress) {
if (myHost != null && ((progress != previousProgress)
|| (!progressLabel.equals(previousProgressLabel)))) {
myHost.updateProgress(progressLabel, progress);
}
previousProgress = progress;
previousProgressLabel = progressLabel;
}
/**
* Used to communicate a progress update between a plugin tool and the main
* Whitebox user interface.
*
* @param progress Float containing the progress value (between 0 and 100).
*/
private void updateProgress(int progress) {
if (myHost != null && progress != previousProgress) {
myHost.updateProgress(progress);
}
previousProgress = progress;
}
/**
* Sets the arguments (parameters) used by the plugin.
*
* @param args An array of string arguments.
*/
@Override
public void setArgs(String[] args) {
this.args = args.clone();
}
private boolean cancelOp = false;
/**
* Used to communicate a cancel operation from the Whitebox GUI.
*
* @param cancel Set to true if the plugin should be canceled.
*/
@Override
public void setCancelOp(boolean cancel) {
cancelOp = cancel;
}
private void cancelOperation() {
showFeedback("Operation cancelled.");
updateProgress("Progress: ", 0);
}
private boolean amIActive = false;
/**
* Used by the Whitebox GUI to tell if this plugin is still running.
*
* @return a boolean describing whether or not the plugin is actively being
* used.
*/
@Override
public boolean isActive() {
return amIActive;
}
/**
* Used to execute this plugin tool.
*/
@Override
public void run() {
amIActive = true;
String inputFilesString = null;
String idrisiHeaderFile = null;
String idrisiDataFile = null;
String whiteboxHeaderFile = null;
String whiteboxDataFile = null;
WhiteboxRaster output = null;
int i = 0;
String[] imageFiles;
int numImages = 0;
double noData = -32768;
InputStream inStream = null;
OutputStream outStream = null;
if (args.length <= 0) {
showFeedback("Plugin parameters have not been set.");
return;
}
for (i = 0; i < args.length; i++) {
if (i == 0) {
inputFilesString = args[i];
}
}
// check to see that the inputHeader and outputHeader are not null.
if ((inputFilesString == null)) {
showFeedback("One or more of the input parameters have not been set properly.");
return;
}
imageFiles = inputFilesString.split(";");
numImages = imageFiles.length;
try {
for (i = 0; i < numImages; i++) {
int progress = (int) (100f * i / (numImages - 1));
updateProgress("Loop " + (i + 1) + " of " + numImages + ":", (int) progress);
idrisiDataFile = imageFiles[i];
// check to see if the file exists.
if (!((new File(idrisiDataFile)).exists())) {
showFeedback("IDRISI raster file does not exist.");
break;
}
idrisiHeaderFile = idrisiDataFile.replace(".rst", ".rdc");
//just in case the file has an .RST extension instead of .rst
if (!idrisiHeaderFile.contains(".rdc")) {
idrisiHeaderFile = idrisiDataFile.replace(".RST", ".rdc");
}
whiteboxHeaderFile = idrisiHeaderFile.replace(".rdc", ".dep");
whiteboxDataFile = idrisiHeaderFile.replace(".rdc", ".tas");
// see if they exist, and if so, delete them.
(new File(whiteboxHeaderFile)).delete();
(new File(whiteboxDataFile)).delete();
if (!createHeaderFile(idrisiHeaderFile, whiteboxHeaderFile)) {
showFeedback("IDRISI header file was not read properly. "
+ "Tool failed to import");
return;
}
int length;
byte[] buffer = new byte[1024];
if (!idrisiFileIsByteDataType && !idrisiFileIsRGB) {
// copy the data file.
File fromfile = new File(idrisiDataFile);
inStream = new FileInputStream(fromfile);
File tofile = new File(whiteboxDataFile);
outStream = new FileOutputStream(tofile);
//copy the file content in bytes
while ((length = inStream.read(buffer)) > 0) {
outStream.write(buffer, 0, length);
}
outStream.close();
inStream.close();
} else if (!idrisiFileIsRGB) {
RandomAccessFile rIn = null;
FileChannel inChannel = null;
int numBytesToRead = nrows * ncols;
ByteBuffer buf = ByteBuffer.allocate(numBytesToRead);
rIn = new RandomAccessFile(idrisiDataFile, "r");
inChannel = rIn.getChannel();
inChannel.position(0);
inChannel.read(buf);
java.nio.ByteOrder byteorder = java.nio.ByteOrder.nativeOrder();
// Check the byte order.
buf.order(byteorder);
buf.rewind();
byte[] ba = new byte[numBytesToRead];
buf.get(ba);
WhiteboxRaster wr = new WhiteboxRaster(whiteboxHeaderFile, "rw");
double z;
int row = 0, col = 0;
for (int j = 0; j < numBytesToRead; j++) {
z = (double) (ba[j] & 0xff);
wr.setValue(row, col, z);
col++;
if (col == ncols) {
col = 0;
row++;
}
}
wr.close();
inChannel.close();
} else {
RandomAccessFile rIn = null;
FileChannel inChannel = null;
int numBytesToRead = nrows * ncols * 3;
ByteBuffer buf = ByteBuffer.allocate(numBytesToRead);
rIn = new RandomAccessFile(idrisiDataFile, "r");
inChannel = rIn.getChannel();
inChannel.position(0);
inChannel.read(buf);
java.nio.ByteOrder byteorder = java.nio.ByteOrder.nativeOrder();
// Check the byte order.
buf.order(byteorder);
buf.rewind();
byte[] ba = new byte[numBytesToRead];
buf.get(ba);
int r, g, b;
WhiteboxRaster wr = new WhiteboxRaster(whiteboxHeaderFile, "rw");
double z;
int row = 0, col = 0;
for (int j = 0; j < numBytesToRead; j += 3) {
b = (int) (ba[j] & 0xff);
g = (int) (ba[j + 1] & 0xff);
r = (int) (ba[j + 2] & 0xff);
z = (double) ((255 << 24) | (b << 16) | (g << 8) | r);
wr.setValue(row, col, z);
col++;
if (col == ncols) {
col = 0;
row++;
}
}
wr.close();
inChannel.close();
}
output = new WhiteboxRaster(whiteboxHeaderFile, "r");
output.findMinAndMaxVals();
output.addMetadataEntry("Created by the "
+ getDescriptiveName() + " tool.");
output.addMetadataEntry("Created on " + new Date());
output.writeHeaderFile();
output.close();
// returning a header file string displays the image.
returnData(whiteboxHeaderFile);
}
} catch (OutOfMemoryError oe) {
myHost.showFeedback("An out-of-memory error has occurred during operation.");
} catch (Exception e) {
myHost.showFeedback("An error has occurred during operation. See log file for details.");
myHost.logException("Error in " + getDescriptiveName(), e);
} finally {
updateProgress("Progress: ", 0);
// tells the main application that this process is completed.
amIActive = false;
myHost.pluginComplete();
}
}
private boolean idrisiFileIsByteDataType = false;
private boolean idrisiFileIsRGB = false;
private int nrows, ncols;
private boolean createHeaderFile(String idrisiHeaderFile, String whiteboxHeaderFile) {
amIActive = true;
DataInputStream in = null;
BufferedReader br = null;
FileWriter fw = null;
BufferedWriter bw = null;
PrintWriter out = null;
try {
double north = 0;
double east = 0;
double west = 0;
double south = 0;
double noData = 0;
String dataType = "float";
String dataScale = "continuous";
String delimiter = ":";
String byteOrder = java.nio.ByteOrder.nativeOrder().toString();
String str1 = null;
// Open the file that is the first command line parameter
FileInputStream fstream = new FileInputStream(idrisiHeaderFile);
// Get the object of DataInputStream
in = new DataInputStream(fstream);
br = new BufferedReader(new InputStreamReader(in));
if (idrisiHeaderFile != null) {
String line;
String[] str;
//Read File Line By Line
while ((line = br.readLine()) != null) {
str = line.split(delimiter);
if (str.length <= 1) {
delimiter = " ";
str = line.split(delimiter);
if (str.length <= 1) {
delimiter = "\t";
str = line.split(delimiter);
}
}
if (str[0].toLowerCase().contains("data type")) {
if (str[str.length - 1].toLowerCase().contains("byte")) {
// showFeedback("This tool does not support byte file types. "
// + "Please convert the file before importing. Only"
// + " 16-bit integer and 32-bit real formats are "
// + "supported.");
// return false;
idrisiFileIsByteDataType = true;
dataType = "integer";
} else if (str[str.length - 1].toLowerCase().contains("int")) {
dataType = "integer";
} else if (str[str.length - 1].toLowerCase().contains("real")) {
dataType = "float";
} else if (str[str.length - 1].toLowerCase().contains("rgb")) {
dataType = "float";
dataScale = "rgb";
idrisiFileIsRGB = true;
}
} else if (str[0].toLowerCase().contains("file type")) {
if (!str[str.length - 1].toLowerCase().contains("binary")) {
showFeedback("This tool only support binary file types. "
+ "Please convert the file before importing.");
return false;
}
} else if (str[0].toLowerCase().contains("columns")) {
ncols = Integer.parseInt(str[str.length - 1].trim());
} else if (str[0].toLowerCase().contains("rows")) {
nrows = Integer.parseInt(str[str.length - 1].trim());
} else if (str[0].toLowerCase().contains("min. x")) {
west = Double.parseDouble(str[str.length - 1].trim());
} else if (str[0].toLowerCase().contains("max. x")) {
east = Double.parseDouble(str[str.length - 1].trim());
} else if (str[0].toLowerCase().contains("min. y")) {
south = Double.parseDouble(str[str.length - 1].trim());
} else if (str[0].toLowerCase().contains("max. y")) {
north = Double.parseDouble(str[str.length - 1].trim());
}
}
//Close the input stream
in.close();
br.close();
int numPixels = ncols * nrows;
fw = new FileWriter(whiteboxHeaderFile, false);
bw = new BufferedWriter(fw);
out = new PrintWriter(bw, true);
str1 = "Min:\t" + Double.toString(Integer.MAX_VALUE);
out.println(str1);
str1 = "Max:\t" + Double.toString(Integer.MIN_VALUE);
out.println(str1);
str1 = "North:\t" + Double.toString(north);
out.println(str1);
str1 = "South:\t" + Double.toString(south);
out.println(str1);
str1 = "East:\t" + Double.toString(east);
out.println(str1);
str1 = "West:\t" + Double.toString(west);
out.println(str1);
str1 = "Cols:\t" + Integer.toString(ncols);
out.println(str1);
str1 = "Rows:\t" + Integer.toString(nrows);
out.println(str1);
str1 = "Data Type:\t" + dataType;
out.println(str1);
str1 = "Z Units:\t" + "not specified";
out.println(str1);
str1 = "XY Units:\t" + "not specified";
out.println(str1);
str1 = "Projection:\t" + "not specified";
out.println(str1);
str1 = "Data Scale:\t" + dataScale;
out.println(str1);
str1 = "Preferred Palette:\t" + "spectrum.pal";
out.println(str1);
str1 = "NoData:\t-9999";
out.println(str1);
if (byteOrder.toLowerCase().contains("lsb")
|| byteOrder.toLowerCase().contains("little")) {
str1 = "Byte Order:\t" + "LITTLE_ENDIAN";
} else {
str1 = "Byte Order:\t" + "BIG_ENDIAN";
}
out.println(str1);
}
return true;
} catch (OutOfMemoryError oe) {
myHost.showFeedback("An out-of-memory error has occurred during operation.");
return false;
} catch (Exception e) {
myHost.showFeedback("An error has occurred during operation. See log file for details.");
myHost.logException("Error in " + getDescriptiveName(), e);
return false;
} finally {
try {
if (in != null || br != null) {
in.close();
br.close();
}
} catch (java.io.IOException ex) {
}
if (out != null || bw != null) {
out.flush();
out.close();
}
}
}
/**
* Used to retrieve the necessary extensions.
* @return String containing the extensions.
*/
@Override
public String[] getExtensions() {
return new String[]{ "txt" };
}
/**
* Used to retrieve the file type name.
* @return String containing the file type name.
*/
@Override
public String getFileTypeName() {
return "ArcGIS ASCII Grid";
}
/**
* Used to check if the file is raster format.
* @return Boolean true if file is raster format.
*/
@Override
public boolean isRasterFormat() {
return true;
}
/**
* Used to retrieve the interoperable plugin type.
* @return
*/
@Override
public InteropPlugin.InteropPluginType getInteropPluginType() {
return InteropPlugin.InteropPluginType.exportPlugin;
}
}