/*
* Copyright (C) 2011-2012 Dr. John Lindsay <jlindsay@uoguelph.ca>
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package plugins;
import java.io.*;
import java.nio.ByteBuffer;
import java.nio.ByteOrder;
import java.nio.channels.FileChannel;
import java.util.Date;
import whitebox.geospatialfiles.WhiteboxRaster;
import whitebox.interfaces.InteropPlugin;
import whitebox.interfaces.WhiteboxPlugin;
import whitebox.interfaces.WhiteboxPluginHost;
/**
* This tool can be used to import a number of generic multiband image data formats, including band interleaved by line (BIL), band interleaved by pixel (BIP), and band sequential (BSQ), to Whitebox GAT raster file format.
*
* @author Dr. John Lindsay email: jlindsay@uoguelph.ca
*/
public class ImportGenericMultibandData implements WhiteboxPlugin, InteropPlugin {
private WhiteboxPluginHost myHost = null;
private String[] args;
/**
* Used to retrieve the plugin tool's name. This is a short, unique name
* containing no spaces.
*
* @return String containing plugin name.
*/
@Override
public String getName() {
return "ImportGenericMultibandData";
}
/**
* Used to retrieve the plugin tool's descriptive name. This can be a longer
* name (containing spaces) and is used in the interface to list the tool.
*
* @return String containing the plugin descriptive name.
*/
@Override
public String getDescriptiveName() {
return "Import Generic Multiband Data (.bil, .bip, .bsq)";
}
/**
* Used to retrieve a short description of what the plugin tool does.
*
* @return String containing the plugin's description.
*/
@Override
public String getToolDescription() {
return "Imports a multiband image file (.bil, .bip, .bsq).";
}
/**
* Used to identify which toolboxes this plugin tool should be listed in.
*
* @return Array of Strings.
*/
@Override
public String[] getToolbox() {
String[] ret = {"IOTools"};
return ret;
}
/**
* Sets the WhiteboxPluginHost to which the plugin tool is tied. This is the
* class that the plugin will send all feedback messages, progress updates,
* and return objects.
*
* @param host The WhiteboxPluginHost that called the plugin tool.
*/
@Override
public void setPluginHost(WhiteboxPluginHost host) {
myHost = host;
}
/**
* Used to communicate feedback pop-up messages between a plugin tool and
* the main Whitebox user-interface.
*
* @param feedback String containing the text to display.
*/
private void showFeedback(String message) {
if (myHost != null) {
myHost.showFeedback(message);
} else {
System.out.println(message);
}
}
/**
* Used to communicate a return object from a plugin tool to the main
* Whitebox user-interface.
*
* @return Object, such as an output WhiteboxRaster.
*/
private void returnData(Object ret) {
if (myHost != null) {
myHost.returnData(ret);
}
}
private int previousProgress = 0;
private String previousProgressLabel = "";
/**
* Used to communicate a progress update between a plugin tool and the main
* Whitebox user interface.
*
* @param progressLabel A String to use for the progress label.
* @param progress Float containing the progress value (between 0 and 100).
*/
private void updateProgress(String progressLabel, int progress) {
if (myHost != null && ((progress != previousProgress)
|| (!progressLabel.equals(previousProgressLabel)))) {
myHost.updateProgress(progressLabel, progress);
}
previousProgress = progress;
previousProgressLabel = progressLabel;
}
/**
* Used to communicate a progress update between a plugin tool and the main
* Whitebox user interface.
*
* @param progress Float containing the progress value (between 0 and 100).
*/
private void updateProgress(int progress) {
if (myHost != null && progress != previousProgress) {
myHost.updateProgress(progress);
}
previousProgress = progress;
}
/**
* Sets the arguments (parameters) used by the plugin.
*
* @param args An array of string arguments.
*/
@Override
public void setArgs(String[] args) {
this.args = args.clone();
}
private boolean cancelOp = false;
/**
* Used to communicate a cancel operation from the Whitebox GUI.
*
* @param cancel Set to true if the plugin should be canceled.
*/
@Override
public void setCancelOp(boolean cancel) {
cancelOp = cancel;
}
private void cancelOperation() {
showFeedback("Operation cancelled.");
updateProgress("Progress: ", 0);
}
private boolean amIActive = false;
/**
* Used by the Whitebox GUI to tell if this plugin is still running.
*
* @return a boolean describing whether or not the plugin is actively being
* used.
*/
@Override
public boolean isActive() {
return amIActive;
}
/**
* Used to execute this plugin tool.
*/
@Override
public void run() {
amIActive = true;
String inputFilesString = null;
String fileName = null;
String whiteboxHeaderFile = null;
// String returnHeaderFile = "";
String whiteboxDataFile = null;
WhiteboxRaster output = null;
int i = 0;
int row, col, rows, cols;
int nBands = 1;
int nBits = 8;
int skipBytes = 0;
double xDim = 1;
double yDim = 1;
double ulxmap = 0;
double ulymap = 0;
String layout = "bil";
String pixelType = "unsignedint";
String xyUnits = "not specified";
String zUnits = "not specified";
String projection = "not specified";
String byteOrder = java.nio.ByteOrder.nativeOrder().toString();
String[] imageFiles;
int numImages = 0;
double noData = -32768;
//InputStream inStream = null;
//OutputStream outStream = null;
String dataType = "float";
String dataScale = "continuous";
DataInputStream in = null;
BufferedReader br = null;
String str1 = null;
FileWriter fw = null;
BufferedWriter bw = null;
PrintWriter out = null;
double west = 0;
double north = 0;
double east = 0;
double south = 0;
RandomAccessFile rIn = null;
FileChannel inChannel = null;
ByteBuffer buf = null;
if (args.length <= 0) {
showFeedback("Plugin parameters have not been set.");
return;
}
inputFilesString = args[0];
// check to see that the inputHeader and outputHeader are not null.
if ((inputFilesString == null)) {
showFeedback("One or more of the input parameters have not been set properly.");
return;
}
imageFiles = inputFilesString.split(";");
numImages = imageFiles.length;
try {
for (i = 0; i < numImages; i++) {
int progress = (int) (100f * i / (numImages - 1));
updateProgress("Loop " + (i + 1) + " of " + numImages + ":", (int) progress);
fileName = imageFiles[i];
// check to see if the file exists.
if (!((new File(fileName)).exists())) {
showFeedback("Image file does not exist.");
break;
}
//File file = new File(fileName);
String fileExtension = whitebox.utilities.FileUtilities.getFileExtension(fileName).toLowerCase();
String[] formatNames = {"bil", "bsq", "bip"};
boolean checkForSupportedFormat = false;
for (String str : formatNames) {
if (str.toLowerCase().equals(fileExtension)) {
checkForSupportedFormat = true;
break;
}
}
if (!checkForSupportedFormat) {
showFeedback("This image file format is not currently supported by this tool.");
return;
}
// read the header file.
String fileHeader = fileName.replace("." + fileExtension, ".hdr");
if (!whitebox.utilities.FileUtilities.fileExists(fileHeader)
|| !fileHeader.contains(".hdr")) {
showFeedback("This image header file (.hdr) could not be located.");
return;
}
// Open the file that is the first command line parameter
FileInputStream fstream = new FileInputStream(fileHeader);
// Get the object of DataInputStream
in = new DataInputStream(fstream);
br = new BufferedReader(new InputStreamReader(in));
String delimiter = ",";
String line;
String[] str;
rows = 0;
cols = 0;
//Read Header File Line By Line
while ((line = br.readLine()) != null) {
if (line.startsWith("data type")) {
line = line.replace("data type", "datatype");
}
if (line.startsWith("header offset")) {
line = line.replace("header offset", "headeroffset");
}
if (line.startsWith("x start")) {
line = line.replace("x start", "xstart");
}
if (line.startsWith("y start")) {
line = line.replace("y start", "ystart");
}
str = line.split(delimiter);
if (str.length <= 1) {
delimiter = " ";
str = line.split(delimiter);
if (str.length <= 1) {
delimiter = "\t";
str = line.split(delimiter);
}
}
if (str[0].toLowerCase().contains("byteorder")) {
if (str[str.length - 1].toLowerCase().contains("i")) {
byteOrder = "LITTLE_ENDIAN";
} else {
byteOrder = "BIG_ENDIAN";
}
} else if (str[0].toLowerCase().contains("nrows")) {
rows = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("ncols")) {
cols = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("nbands")) {
nBands = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("nbits")) {
nBits = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("skipbytes")) {
skipBytes = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("xdim")) {
xDim = Double.parseDouble(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("ydim")) {
yDim = Double.parseDouble(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("ulxmap")) {
ulxmap = Double.parseDouble(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("ulymap")) {
ulymap = Double.parseDouble(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("layout")) {
layout = str[str.length - 1].toLowerCase();
} else if (str[0].toLowerCase().contains("pixeltype")) {
// options include signedint, unsignedint (or simply int), and float
if (str[str.length - 1].toLowerCase().contains("float")) {
pixelType = "float";
} else if (str[str.length - 1].toLowerCase().contains("signed")
&& !str[str.length - 1].toLowerCase().contains("unsigned")) {
pixelType = "signedint";
} else {
pixelType = "unsignedint";
}
} else if (str[0].toLowerCase().contains("xyunits")) {
xyUnits = str[str.length - 1].toLowerCase();
} else if (str[0].toLowerCase().contains("zunits")) {
zUnits = str[str.length - 1].toLowerCase();
} else if (str[0].toLowerCase().contains("projection")) {
projection = str[str.length - 1].toLowerCase();
} else if (str[0].toLowerCase().contains("nodata")) {
noData = Double.parseDouble(str[str.length - 1]);
} // handle some envi header info
else if (str[0].toLowerCase().contains("lines")) {
rows = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("samples")) {
cols = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("bands")) {
nBands = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("headeroffset")) {
skipBytes = Integer.parseInt(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("interleave")) {
layout = str[str.length - 1].toLowerCase();
} else if (str[0].toLowerCase().equals("xstart")) {
//ulxmap = Double.parseDouble(str[str.length - 1]);
} else if (str[0].toLowerCase().equals("ystart")) {
//ulymap = Double.parseDouble(str[str.length - 1]);
} else if (str[0].toLowerCase().contains("datatype")) {
int enviDTCode = Integer.parseInt(str[str.length - 1]);
switch (enviDTCode) {
case 1:
nBits = 8;
pixelType = "unsignedint";
break;
case 2:
nBits = 16;
pixelType = "signedint";
break;
case 3:
nBits = 32;
pixelType = "signedint";
break;
case 4:
nBits = 32;
pixelType = "float";
break;
case 5:
nBits = 64;
pixelType = "float";
break;
case 6:
showFeedback("Whitebox does not support the import of complex number file formats.");
return;
case 9:
showFeedback("Whitebox does not support the import of complex number file formats.");
return;
case 12:
nBits = (int) 16;
pixelType = "unsignedint";
break;
case 13:
nBits = 32;
pixelType = "unsignedint";
break;
case 14:
nBits = 64;
pixelType = "unsignedint";
break;
}
}
}
// See if there is a world file and if so, read it.
char[] extChars = fileExtension.toCharArray();
boolean worldFileFound = false;
String wfExtension = Character.toString(extChars[0])
+ Character.toString(extChars[2]) + "w";
String worldFile = imageFiles[i].replace(fileExtension, wfExtension);
if ((new File(worldFile)).exists()) {
worldFileFound = true;
} else {
wfExtension = fileExtension + "w";
worldFile = imageFiles[i].replace(fileExtension, wfExtension);
if ((new File(worldFile)).exists()) {
worldFileFound = true;
} else {
wfExtension = ".wld";
worldFile = imageFiles[i].replace(fileExtension, wfExtension);
if ((new File(worldFile)).exists()) {
worldFileFound = true;
}
}
}
if (worldFileFound) {
double A = 0, B = 0, C = 0, D = 0, E = 0, F = 0; // these are six-parameter affine transformation values;
// read it
fstream = new FileInputStream(worldFile);
in = new DataInputStream(fstream);
br = new BufferedReader(new InputStreamReader(in));
int n = 0;
//Read File Line By Line
while ((line = br.readLine()) != null) {
switch (n) {
case 0:
A = Double.parseDouble(line);
break;
case 1:
D = Double.parseDouble(line);
break;
case 2:
B = Double.parseDouble(line);
break;
case 3:
E = Double.parseDouble(line);
break;
case 4:
C = Double.parseDouble(line);
break;
case 5:
F = Double.parseDouble(line);
break;
}
n++;
}
if (B == 0 && D == 0) { // there is no rotation
west = A * 0 + B * 0 + C;
north = D * 0 + E * 0 + F;
east = A * (cols - 1) + B * (rows - 1) + C;
south = D * (cols - 1) + E * (rows - 1) + F;
} else { // rotated image
showFeedback("We're sorry but Whitebox cannot currently handle the import of rotated images.");
break;
}
} else {
west = ulxmap;
north = ulymap;
east = ulxmap + cols * xDim;
south = ulymap - rows * yDim;
}
// decide on a data type
if (nBits <= 32 && pixelType.toLowerCase().contains("int")) {
dataType = "integer";
} else if (nBits <= 32 && pixelType.toLowerCase().contains("float")) {
dataType = "float";
} else {
dataType = "double";
}
for (int a = 0; a < nBands; a++) {
// create a whitebox raster to hold the data.
if (nBands > 1) {
whiteboxHeaderFile = imageFiles[i].replace("." + fileExtension, "_band" + (a + 1) + ".dep");
whiteboxDataFile = imageFiles[i].replace("." + fileExtension, "_band" + (a + 1) + ".tas");
} else {
whiteboxHeaderFile = imageFiles[i].replace("." + fileExtension, ".dep");
whiteboxDataFile = imageFiles[i].replace("." + fileExtension, ".tas");
}
// see if they exist, and if so, delete them.
(new File(whiteboxHeaderFile)).delete();
(new File(whiteboxDataFile)).delete();
// if (i == 0 && a == 0) {
// returnHeaderFile = whiteboxHeaderFile;
// }
// create the whitebox header file.
fw = new FileWriter(whiteboxHeaderFile, false);
bw = new BufferedWriter(fw);
out = new PrintWriter(bw, true);
String outputByteOrder = java.nio.ByteOrder.nativeOrder().toString();
str1 = "Min:\t" + Double.toString(Integer.MAX_VALUE);
out.println(str1);
str1 = "Max:\t" + Double.toString(Integer.MIN_VALUE);
out.println(str1);
str1 = "North:\t" + Double.toString(north);
out.println(str1);
str1 = "South:\t" + Double.toString(south);
out.println(str1);
str1 = "East:\t" + Double.toString(east);
out.println(str1);
str1 = "West:\t" + Double.toString(west);
out.println(str1);
str1 = "Cols:\t" + Integer.toString(cols);
out.println(str1);
str1 = "Rows:\t" + Integer.toString(rows);
out.println(str1);
str1 = "Data Type:\t" + dataType;
out.println(str1);
str1 = "Z Units:\t" + zUnits;
out.println(str1);
str1 = "XY Units:\t" + xyUnits;
out.println(str1);
str1 = "Projection:\t" + projection;
out.println(str1);
str1 = "Data Scale:\t" + dataScale;
out.println(str1);
str1 = "Preferred Palette:\t" + "grey.pal";
out.println(str1);
str1 = "NoData:\t" + String.valueOf(noData);
out.println(str1);
if (outputByteOrder.toLowerCase().contains("lsb")
|| outputByteOrder.toLowerCase().contains("little")) {
str1 = "Byte Order:\t" + "LITTLE_ENDIAN";
} else {
str1 = "Byte Order:\t" + "BIG_ENDIAN";
}
out.println(str1);
// now create the data file
output = new WhiteboxRaster(whiteboxHeaderFile, "rw");
int numBytes = nBits / 8;
int pos;
if (layout.equals("bil") || fileExtension.equals("bil")) {
int readLengthInBytes = cols * numBytes;
int rowLength = cols * numBytes * nBands;
buf = ByteBuffer.allocate(readLengthInBytes);
if (byteOrder.toLowerCase().contains("little")) {
buf.order(ByteOrder.LITTLE_ENDIAN);
} else {
buf.order(ByteOrder.BIG_ENDIAN);
}
rIn = new RandomAccessFile(fileName, "r");
inChannel = rIn.getChannel();
// read the data into the file(s)
if (nBits == 8 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedByte(buf, col * numBytes);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 8 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.get(col * numBytes));
}
outputRow--;
}
} else if (nBits == 16 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedShort(buf, col * numBytes);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 16 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getShort(col * numBytes));
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedInt(buf, col * numBytes);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getInt(col * numBytes));
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("float")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getFloat(col * numBytes));
}
outputRow--;
}
} else if (nBits == 64 && pixelType.equals("unsignedint")) {
// java doesn't have a native data type that can hold this.
showFeedback("We're sorry but this data type is not supported for import to Whitebox.");
break;
} else if (nBits == 64 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getLong(col * numBytes));
}
outputRow--;
}
} else if (nBits == 64 && pixelType.equals("float")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength + a * readLengthInBytes;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getDouble(col * numBytes));
}
outputRow--;
}
}
output.addMetadataEntry("Created by the "
+ getDescriptiveName() + " tool.");
output.addMetadataEntry("Created on " + new Date());
output.writeHeaderFile();
output.close();
} else if (layout.equals("bsq") || fileExtension.equals("bsq")) {
int rowLength = cols * numBytes;
int bandLength = rows * cols * numBytes;
buf = ByteBuffer.allocate(rowLength);
if (byteOrder.toLowerCase().contains("little")) {
buf.order(ByteOrder.LITTLE_ENDIAN);
} else {
buf.order(ByteOrder.BIG_ENDIAN);
}
rIn = new RandomAccessFile(fileName, "r");
inChannel = rIn.getChannel();
// read the data into the file(s)
if (nBits == 8 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedByte(buf, col * numBytes);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 8 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.get(col * numBytes));
}
outputRow--;
}
} else if (nBits == 16 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedShort(buf, col * numBytes);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 16 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getShort(col * numBytes));
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedInt(buf, col * numBytes);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getInt(col * numBytes));
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("float")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getFloat(col * numBytes));
}
outputRow--;
}
} else if (nBits == 64 && pixelType.equals("unsignedint")) {
// java doesn't have a native data type that can hold this.
showFeedback("We're sorry but this data type is not supported for import to Whitebox.");
break;
} else if (nBits == 64 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getLong(col * numBytes));
}
outputRow--;
}
} else if (nBits == 64 && pixelType.equals("float")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + a * bandLength + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getDouble(col * numBytes));
}
outputRow--;
}
}
output.addMetadataEntry("Created by the "
+ getDescriptiveName() + " tool.");
output.addMetadataEntry("Created on " + new Date());
output.writeHeaderFile();
output.close();
} else if (layout.equals("bip") || fileExtension.equals("bip")) {
//int readLengthInBytes = cols * numBytes * nBands;
int rowLength = cols * numBytes * nBands;
buf = ByteBuffer.allocate(rowLength);
if (byteOrder.toLowerCase().contains("little")) {
buf.order(ByteOrder.LITTLE_ENDIAN);
} else {
buf.order(ByteOrder.BIG_ENDIAN);
}
rIn = new RandomAccessFile(fileName, "r");
inChannel = rIn.getChannel();
// read the data into the file(s)
if (nBits == 8 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedByte(buf, col * numBytes * a);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 8 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.get(col * numBytes * a));
}
outputRow--;
}
} else if (nBits == 16 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedShort(buf, col * numBytes * a);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 16 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getShort(col * numBytes * a));
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("unsignedint")) {
double z;
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
z = whitebox.utilities.Unsigned.getUnsignedInt(buf, col * numBytes * a);
output.setValue(outputRow, col, z);
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getInt(col * numBytes * a));
}
outputRow--;
}
} else if (nBits == 32 && pixelType.equals("float")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getFloat(col * numBytes * a));
}
outputRow--;
}
} else if (nBits == 64 && pixelType.equals("unsignedint")) {
// java doesn't have a native data type that can hold this.
showFeedback("We're sorry but this data type is not supported for import to Whitebox.");
break;
} else if (nBits == 64 && pixelType.equals("signedint")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getLong(col * numBytes * a));
}
outputRow--;
}
} else if (nBits == 64 && pixelType.equals("float")) {
int outputRow = rows - 1;
for (row = 0; row < rows; row++) {
pos = skipBytes + row * rowLength;
inChannel.position(pos);
buf.clear();
inChannel.read(buf);
for (col = 0; col < cols; col++) {
output.setValue(outputRow, col, buf.getDouble(col * numBytes * a));
}
outputRow--;
}
}
output.addMetadataEntry("Created by the "
+ getDescriptiveName() + " tool.");
output.addMetadataEntry("Created on " + new Date());
output.writeHeaderFile();
output.close();
}
if (a < 10) { // you probably don't want to display all the images in a hyperspectral dataset.
returnData(whiteboxHeaderFile);
}
}
}
} catch (OutOfMemoryError oe) {
myHost.showFeedback("An out-of-memory error has occurred during operation.");
} catch (Exception e) {
myHost.showFeedback("An error has occurred during operation. See log file for details.");
myHost.logException("Error in " + getDescriptiveName(), e);
} finally {
updateProgress("Progress: ", 0);
// tells the main application that this process is completed.
amIActive = false;
myHost.pluginComplete();
}
}
/**
* Used to retrieve the necessary extensions.
* @return String containing the extensions.
*/
@Override
public String[] getExtensions() {
return new String[]{ "txt" };
}
/**
* Used to retrieve the file type name.
* @return String containing the file type name.
*/
@Override
public String getFileTypeName() {
return "ArcGIS ASCII Grid";
}
/**
* Used to check if the file is raster format.
* @return Boolean true if file is raster format.
*/
@Override
public boolean isRasterFormat() {
return true;
}
/**
* Used to retrieve the interoperable plugin type.
* @return
*/
@Override
public InteropPlugin.InteropPluginType getInteropPluginType() {
return InteropPlugin.InteropPluginType.exportPlugin;
}
}
// // This method is only used during testing.
// public static void main(String[] args) {
// args = new String[1];
// args[0] = "/Users/johnlindsay/Documents/Data/MultibandImage/IKONOS_CFBWainwright_MSI_AOI_1.bsq";
// ImportGenericMultibandData igmd = new ImportGenericMultibandData();
// igmd.setArgs(args);
// igmd.run();
// }