/*-
* Copyright 2016 Diamond Light Source Ltd.
*
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Eclipse Public License v1.0
* which accompanies this distribution, and is available at
* http://www.eclipse.org/legal/epl-v10.html
*/
package uk.ac.diamond.scisoft.analysis.processing.operations.mask;
import org.eclipse.dawnsci.analysis.api.metadata.IDiffractionMetadata;
import org.eclipse.dawnsci.analysis.api.processing.Atomic;
import org.eclipse.dawnsci.analysis.api.processing.OperationData;
import org.eclipse.dawnsci.analysis.api.processing.OperationException;
import org.eclipse.dawnsci.analysis.api.processing.OperationRank;
import org.eclipse.dawnsci.analysis.dataset.operations.AbstractOperation;
import org.eclipse.january.IMonitor;
import org.eclipse.january.MetadataException;
import org.eclipse.january.dataset.Dataset;
import org.eclipse.january.dataset.DatasetUtils;
import org.eclipse.january.dataset.IDataset;
import org.eclipse.january.metadata.MaskMetadata;
import org.eclipse.january.metadata.MetadataFactory;
import uk.ac.diamond.scisoft.analysis.diffraction.powder.PixelIntegration;
import uk.ac.diamond.scisoft.analysis.diffraction.powder.PixelIntegrationBean;
import uk.ac.diamond.scisoft.analysis.diffraction.powder.PixelIntegrationCache;
import uk.ac.diamond.scisoft.analysis.io.DiffractionMetadata;
import uk.ac.diamond.scisoft.analysis.roi.XAxis;
@Atomic
public class MaskOutliersInQOperation extends AbstractOperation<MaskOutliersInQModel, OperationData> {
private volatile PixelIntegrationCache cache;
private IDiffractionMetadata metadata;
@Override
public String getId() {
return "uk.ac.diamond.scisoft.analysis.processing.operations.mask.MaskOutliersInQOperation";
}
@Override
public OperationRank getInputRank() {
return OperationRank.TWO;
}
@Override
public OperationRank getOutputRank() {
return OperationRank.TWO;
}
@Override
protected OperationData process(IDataset input, IMonitor monitor) throws OperationException {
DiffractionMetadata meta = input.getFirstMetadata(DiffractionMetadata.class);
if (meta == null) throw new OperationException(this, "Does not contain calibration information!");
if (metadata == null) {
metadata = meta;
cache = null;
} else {
boolean dee = metadata.getDiffractionCrystalEnvironment().equals(meta.getDiffractionCrystalEnvironment());
boolean dpe = metadata.getDetector2DProperties().equals(meta.getDetector2DProperties());
if (!dpe || !dee) {
metadata = meta;
cache = null;
}
}
PixelIntegrationCache lcache = getCache(input, meta);
IDataset mask = null;
if (input.getFirstMetadata(MaskMetadata.class) != null) {
MaskMetadata mm = input.getFirstMetadata(MaskMetadata.class);
if (mm.getMask() != null) {
mask = mm.getMask();
}
}
Dataset calculateOutlierMask = PixelIntegration.calculateOutlierMask(DatasetUtils.convertToDataset(input), mask, lcache, model.getScale(),model.isLow(),model.isHigh());
MaskMetadata mm;
try {
mm = MetadataFactory.createMetadata(MaskMetadata.class, calculateOutlierMask);
} catch (MetadataException e) {
throw new OperationException(this, e);
}
input.setMetadata(mm);
return new OperationData(input);
}
private PixelIntegrationCache getCache(IDataset input, IDiffractionMetadata meta) {
PixelIntegrationCache lcache = cache;
if (lcache == null) {
synchronized(this) {
lcache = cache;
if (lcache == null) {
PixelIntegrationBean bean = new PixelIntegrationBean();
bean.setUsePixelSplitting(false);
bean.setxAxis(XAxis.Q);
bean.setAzimuthalIntegration(true);
bean.setTo1D(true);
bean.setShape(input.getShape());
cache = lcache = new PixelIntegrationCache(meta, bean);
}
}
}
return lcache;
}
}