/*
* Copyright (c) 2017 Diamond Light Source Ltd.
*
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Eclipse Public License v1.0
* which accompanies this distribution, and is available at
* http://www.eclipse.org/legal/epl-v10.html
*/
package uk.ac.diamond.scisoft.analysis.processing.operations;
// Import org.eclipse.dawnsci
import org.eclipse.dawnsci.analysis.api.processing.OperationData;
import org.eclipse.dawnsci.analysis.api.processing.OperationException;
import org.eclipse.dawnsci.analysis.api.processing.OperationRank;
import org.eclipse.dawnsci.analysis.dataset.operations.AbstractOperationBase;
// Import org.eclipse.january
import org.eclipse.january.IMonitor;
import org.eclipse.january.dataset.IDataset;
import org.eclipse.january.metadata.AxesMetadata;
//Import uk.ac.diamond.scisoft
import uk.ac.diamond.scisoft.analysis.io.LoaderFactory;
//
// @ Author: Tim Snow
//
// A processing operation to pull through additional axes
//
public class AxisPullthroughOperation extends AbstractOperationBase<AxisPullthroughModel, OperationData> {
// Let's give this process an ID tag
@Override
public String getId() {
return "uk.ac.diamond.scisoft.analysis.processing.operations.AxisPullthroughOperation";
}
// Before we start, let's make sure we know how many dimensions of data are going in...
@Override
public OperationRank getInputRank() {
return OperationRank.ANY;
}
// ...and out
@Override
public OperationRank getOutputRank() {
return OperationRank.SAME;
}
@Override
public OperationData execute(IDataset inputDataset, IMonitor monitor) throws OperationException {
// Get the appropriate dataset from the file
IDataset axisDataset;
// If it exists that is...
try {
axisDataset = LoaderFactory.getDataSet(getSliceSeriesMetadata(inputDataset).getSourceInfo().getFilePath(), model.getAxisPath(), null);
} catch (Exception e) {
throw new OperationException(this, "The axis: " + model.getAxisPath() + " is not present in this file!");
}
// And name it
axisDataset.setName(model.getAxisPath());
// Make a copy of the dataset and it's metadata for output
IDataset outputDataset = inputDataset.clone();
copyMetadata(inputDataset, outputDataset);
// Retrieve the current axes from the dataset passed to us
AxesMetadata axesMetadata;
// If any exist...
try {
axesMetadata = outputDataset.getMetadata(AxesMetadata.class).get(0);
} catch (Exception e) {
throw new OperationException(this, "Cannot find appropriate Axes in the data file");
}
// Work out the shape and dimensionality of the axis/axes
int[] datasetShape = axisDataset.getShape();
int datasetDimensionality = datasetShape.length;
// Add them in an appropriate matter, doing some double checking where necessary
if (datasetDimensionality == 1 && datasetDimensionality != 0){
axesMetadata.addAxis(0, axisDataset);
} else {
try {
axesMetadata.addAxis(0, axisDataset, datasetShape);
} catch (Exception datasetShapeError) {
throw new OperationException(this, "The axis to pull through is of a different dimensionality and/or shape");
}
}
// Add this metadata to the output dataset
outputDataset.setMetadata(axesMetadata);
// Then return it!
return new OperationData(outputDataset);
}
}