/*-
* Copyright (c) 2016 Diamond Light Source Ltd.
*
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Eclipse Public License v1.0
* which accompanies this distribution, and is available at
* http://www.eclipse.org/legal/epl-v10.html
*/
package uk.ac.diamond.scisoft.analysis.processing.operations;
import org.eclipse.dawnsci.analysis.api.image.IImageStitchingProcess;
import org.eclipse.dawnsci.analysis.api.processing.OperationData;
import org.eclipse.dawnsci.analysis.api.processing.OperationRank;
import org.eclipse.dawnsci.analysis.dataset.operations.AbstractOperation;
import org.eclipse.dawnsci.analysis.dataset.slicer.SliceFromSeriesMetadata;
import org.eclipse.january.IMonitor;
import org.eclipse.january.dataset.IDataset;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import uk.ac.diamond.scisoft.analysis.io.LoaderFactory;
import uk.ac.diamond.scisoft.analysis.processing.operations.utils.OperationServiceLoader;
public class StitchingTwoImagesOperation extends AbstractOperation<StitchingTwoImagesModel, OperationData> {
private final Logger logger = LoggerFactory.getLogger(StitchingTwoImagesOperation.class);
private IImageStitchingProcess imageStitchingService;
@Override
public String getId() {
return "uk.ac.diamond.scisoft.analysis.processing.operations.StitchingTwoImagesOperation";
}
@Override
public OperationData process(IDataset dataset, IMonitor monitor) {
// get series metadata (will not be null), to check we are from the same
// parent and whether we have hit the final image
SliceFromSeriesMetadata ssm = getSliceSeriesMetadata(dataset);
String filePath = ((StitchingTwoImagesModel) model).getFilePath();
String dataName = ((StitchingTwoImagesModel) model).getDataName();
double xTransl = ((StitchingTwoImagesModel) model).getxTransl();
double yTransl = ((StitchingTwoImagesModel) model).getyTransl();
// boolean useFeatureAssociation = ((StitchingTwoImagesModel) model).isFeatureAssociated();
IDataset stitched = null;
IDataset imageB = null;
if (imageStitchingService == null)
imageStitchingService = OperationServiceLoader.getImageStitchingService();
try {
imageB = LoaderFactory.getDataSet(filePath, dataName, monitor).squeeze();
stitched = imageStitchingService.stitch(dataset, imageB, new double[] {-xTransl, -yTransl});
} catch (Exception e) {
logger.error("Error running stitching process:", e);
}
SliceFromSeriesMetadata outsmm = ssm.clone();
for (int i = 0; i < ssm.getParent().getRank(); i++) {
if (!outsmm.isDataDimension(i))
outsmm.reducedDimensionToSingular(i);
}
stitched.setMetadata(outsmm);
return new OperationData(stitched);
}
@Override
public OperationRank getInputRank() {
return OperationRank.TWO;
}
@Override
public OperationRank getOutputRank() {
return OperationRank.TWO;
}
}