/* * Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK * MISO project contacts: Robert Davey, Mario Caccamo @ TGAC * ********************************************************************* * * This file is part of MISO. * * MISO is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * MISO is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with MISO. If not, see <http://www.gnu.org/licenses/>. * * ********************************************************************* */ package uk.ac.bbsrc.tgac.miso.runstats.server; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.integration.file.DefaultDirectoryScanner; import java.io.File; import java.util.ArrayList; import java.util.Arrays; import java.util.List; import java.util.regex.Matcher; import java.util.regex.Pattern; /** * uk.ac.bbsrc.tgac.miso.notification.core * <p/> * Info * * @author Rob Davey * @date 13-Dec-2010 * @since 0.0.2 */ public class StatisticsScanner extends DefaultDirectoryScanner { protected static final Logger log = LoggerFactory.getLogger(StatisticsScanner.class); private Pattern runDirPattern; private Pattern statsFilePattern; private String statsDir; public StatisticsScanner(String runDirRegex, String statsDir, String statsFileRegex) { this.statsDir = statsDir; runDirPattern = Pattern.compile(runDirRegex); statsFilePattern = Pattern.compile(runDirRegex + statsDir + statsFileRegex); } protected File[] listEligibleFiles(File directory) throws IllegalArgumentException { File[] rootFiles = directory.listFiles(); List<File> files = new ArrayList<File>(rootFiles.length); for (File rootFile : rootFiles) { if (rootFile.isDirectory()) { Matcher rm = runDirPattern.matcher(rootFile.getAbsolutePath()); if (rm.matches()) { File f = new File(rootFile.getAbsolutePath(), statsDir); if (f.exists()) { File[] statsFiles = f.listFiles(); if (statsFiles != null) { for (File sf : statsFiles) { Matcher sm = statsFilePattern.matcher(sf.getAbsolutePath()); if (sm.matches()) { log.debug("Added " + sf.getAbsolutePath()); files.add(sf); } } } } } else { if (rm.find()) { files.addAll(Arrays.asList(listEligibleFiles(rootFile))); } } } } return files.toArray(new File[files.size()]); } }