/* * Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK * MISO project contacts: Robert Davey, Mario Caccamo @ TGAC * ********************************************************************* * * This file is part of MISO. * * MISO is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * MISO is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with MISO. If not, see <http://www.gnu.org/licenses/>. * * ********************************************************************* */ package uk.ac.bbsrc.tgac.miso.task.demo; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import uk.ac.ebi.fgpt.conan.model.ConanParameter; import uk.ac.ebi.fgpt.conan.model.ConanProcess; import uk.ac.ebi.fgpt.conan.service.exception.ProcessExecutionException; import java.util.ArrayList; import java.util.Collection; import java.util.HashMap; import java.util.Map; /** * uk.ac.bbsrc.tgac.miso.task.lsf * <p/> * Test LSF process task * * @author Rob Davey * @date 23-Jun-2011 * @since 0.0.3 */ public class TestLsfProcess implements ConanProcess { protected static final Logger log = LoggerFactory.getLogger(TestLsfProcess.class); public static void main(String[] args) { log.info("Setting up TestLsfProcess"); TestLsfProcess tlsfp = new TestLsfProcess(); try { Map<ConanParameter, String> testParams = new HashMap<ConanParameter, String>(); testParams.put(new ConanParameter() { @Override public String getName() { return "foo"; } @Override public String getDescription() { return "foo"; } @Override public boolean isBoolean() { return false; } @Override public boolean validateParameterValue(String s) { return s != null; } }, "foo"); testParams.put(new ConanParameter() { @Override public String getName() { return "bar"; } @Override public String getDescription() { return "bar"; } @Override public boolean isBoolean() { return false; } @Override public boolean validateParameterValue(String s) { return s != null; } }, "bar"); log.info("Parameters set. Executing..."); boolean foo = tlsfp.execute(testParams); log.info("Result: " + foo); } catch (InterruptedException e) { e.printStackTrace(); } catch (ProcessExecutionException e) { e.printStackTrace(); } } public boolean execute(Map<ConanParameter, String> parameters) throws IllegalArgumentException, ProcessExecutionException, InterruptedException { return new TestLsfTask().execute(parameters); } public String getName() { return "TestLsfProcess"; } public Collection<ConanParameter> getParameters() { return new ArrayList<ConanParameter>(); } }