/* * Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK * MISO project contacts: Robert Davey, Mario Caccamo @ TGAC * ********************************************************************* * * This file is part of MISO. * * MISO is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * MISO is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with MISO. If not, see <http://www.gnu.org/licenses/>. * * ********************************************************************* */ package uk.ac.bbsrc.tgac.miso.core.service.integration.strategy.interrogator; import net.sf.json.JSONObject; import uk.ac.bbsrc.tgac.miso.core.data.SequencerReference; import uk.ac.bbsrc.tgac.miso.core.data.Status; import uk.ac.bbsrc.tgac.miso.core.data.type.HealthType; import uk.ac.bbsrc.tgac.miso.core.exception.InterrogationException; import uk.ac.bbsrc.tgac.miso.core.service.integration.strategy.SequencerInterrogationStrategy; import java.util.List; /** * This class represents an entry point that couples a SequencerInterrogationStrategy to a SequencerReference, so that reference can be * interrogated by that strategy. In this way, each mechanism that can be employed by a strategy has to be wrapped up with a SequencerReference. * * @author Rob Davey * @since 0.0.2 */ public class SequencerInterrogator { /** Field strategy */ private SequencerInterrogationStrategy strategy; /** Field reference */ private SequencerReference reference; /** * Creates a new SequencerInterrogator instance from a given SequencerInterrogationStrategy and SequencerReference * * @param strategy of type SequencerInterrogationStrategy * @param reference of type SequencerReference */ public SequencerInterrogator(SequencerInterrogationStrategy strategy, SequencerReference reference) { this.strategy = strategy; this.reference = reference; } /** * List the status of all runs exposed by the SequencerInterrogationStrategy supplied at construction * @return List<Status> * @throws InterrogationException when */ public List<Status> listAllStatus() throws InterrogationException { return strategy.listAllStatus(reference); } /** * List the status of all runs on a given machine exposed by the SequencerInterrogationStrategy supplied at construction * @param name of type String * @return List<Status> * @throws InterrogationException when */ public List<Status> listAllStatusBySequencerName(String name) throws InterrogationException { return strategy.listAllStatusBySequencerName(reference, name); } /** * List all runs of a given HealthType on a given machine exposed by the SequencerInterrogationStrategy supplied at construction * @param healthType of type HealthType * @return List<String> * @throws InterrogationException when */ public List<String> listAllRunsByHealthType(HealthType healthType) throws InterrogationException { return strategy.listRunsByHealthType(reference, healthType); } /** * List all complete runs exposed by the SequencerInterrogationStrategy supplied at construction * @return List<String> * @throws InterrogationException when */ public List<String> listAllCompleteRuns() throws InterrogationException { return strategy.listAllCompleteRuns(reference); } /** * List all imcomplete runs exposed by the SequencerInterrogationStrategy supplied at construction * @return List<String> * @throws InterrogationException when */ public List<String> listAllIncompleteRuns() throws InterrogationException { return strategy.listAllIncompleteRuns(reference); } /** * Get the status of a single run exposed by the SequencerInterrogationStrategy supplied at construction * * @param name of type String * @return Status * @throws InterrogationException when */ public Status getRunStatus(String name) throws InterrogationException { return strategy.getRunStatus(reference, name); } /** * Get the information about a single run exposed by the SequencerInterrogationStrategy supplied at construction * * @param name of type String * @return JSONObject * @throws InterrogationException when */ public JSONObject getRunInformation(String name) throws InterrogationException { return strategy.getRunInformation(reference, name); } }