/*
* Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK
* MISO project contacts: Robert Davey, Mario Caccamo @ TGAC
* *********************************************************************
*
* This file is part of MISO.
*
* MISO is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* MISO is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MISO. If not, see <http://www.gnu.org/licenses/>.
*
* *********************************************************************
*/
package uk.ac.bbsrc.tgac.miso.webapp.controller.rest;
import com.eaglegenomics.simlims.core.User;
import org.codehaus.jackson.map.ObjectMapper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Controller;
import org.springframework.web.bind.annotation.*;
import uk.ac.bbsrc.tgac.miso.core.data.Library;
import uk.ac.bbsrc.tgac.miso.core.data.Project;
import uk.ac.bbsrc.tgac.miso.core.data.Sample;
import uk.ac.bbsrc.tgac.miso.core.manager.RequestManager;
import uk.ac.bbsrc.tgac.miso.core.util.jackson.ProjectSampleRecursionAvoidanceMixin;
import uk.ac.bbsrc.tgac.miso.core.util.jackson.SampleRecursionAvoidanceMixin;
import uk.ac.bbsrc.tgac.miso.core.util.jackson.UserInfoMixin;
import uk.ac.bbsrc.tgac.miso.webapp.util.RestUtils;
import java.io.IOException;
import java.util.Collection;
/**
* A controller to handle all REST requests for Libraries
*
* @author Rob Davey
* @date 16-Aug-2011
* @since 0.1.0
*/
@Controller
@RequestMapping("/rest/library")
@SessionAttributes("library")
public class LibraryRestController {
protected static final Logger log = LoggerFactory.getLogger(LibraryRestController.class);
@Autowired
private RequestManager requestManager;
public void setRequestManager(RequestManager requestManager) {
this.requestManager = requestManager;
}
@RequestMapping(value = "{libraryId}", method = RequestMethod.GET)
public @ResponseBody String getLibraryById(@PathVariable Long libraryId) throws IOException {
ObjectMapper mapper = new ObjectMapper();
try {
Library l = requestManager.getLibraryById(libraryId);
if (l != null) {
mapper.getSerializationConfig().addMixInAnnotations(Project.class, ProjectSampleRecursionAvoidanceMixin.class);
mapper.getSerializationConfig().addMixInAnnotations(Sample.class, SampleRecursionAvoidanceMixin.class);
mapper.getSerializationConfig().addMixInAnnotations(User.class, UserInfoMixin.class);
return mapper.writeValueAsString(l);
}
return mapper.writeValueAsString(RestUtils.error("No such library with that ID.", "libraryId", libraryId.toString()));
}
catch (IOException ioe) {
return mapper.writeValueAsString(RestUtils.error("Cannot retrieve library: " + ioe.getMessage(), "libraryId", libraryId.toString()));
}
}
@RequestMapping(method = RequestMethod.GET)
public @ResponseBody String listAllLibraries() throws IOException {
Collection<Library> libraries = requestManager.listAllLibraries();
ObjectMapper mapper = new ObjectMapper();
mapper.getSerializationConfig().addMixInAnnotations(Project.class, ProjectSampleRecursionAvoidanceMixin.class);
mapper.getSerializationConfig().addMixInAnnotations(Sample.class, SampleRecursionAvoidanceMixin.class);
mapper.getSerializationConfig().addMixInAnnotations(User.class, UserInfoMixin.class);
return mapper.writeValueAsString(libraries);
}
}