/* * Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK * MISO project contacts: Robert Davey, Mario Caccamo @ TGAC * ********************************************************************* * * This file is part of MISO. * * MISO is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * MISO is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with MISO. If not, see <http://www.gnu.org/licenses/>. * * ********************************************************************* */ package uk.ac.bbsrc.tgac.miso.webapp.controller.rest; import com.eaglegenomics.simlims.core.User; import org.codehaus.jackson.map.ObjectMapper; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Controller; import org.springframework.web.bind.annotation.*; import uk.ac.bbsrc.tgac.miso.core.data.Library; import uk.ac.bbsrc.tgac.miso.core.data.Project; import uk.ac.bbsrc.tgac.miso.core.data.Sample; import uk.ac.bbsrc.tgac.miso.core.manager.RequestManager; import uk.ac.bbsrc.tgac.miso.core.util.jackson.ProjectSampleRecursionAvoidanceMixin; import uk.ac.bbsrc.tgac.miso.core.util.jackson.SampleRecursionAvoidanceMixin; import uk.ac.bbsrc.tgac.miso.core.util.jackson.UserInfoMixin; import uk.ac.bbsrc.tgac.miso.webapp.util.RestUtils; import java.io.IOException; import java.util.Collection; /** * A controller to handle all REST requests for Libraries * * @author Rob Davey * @date 16-Aug-2011 * @since 0.1.0 */ @Controller @RequestMapping("/rest/library") @SessionAttributes("library") public class LibraryRestController { protected static final Logger log = LoggerFactory.getLogger(LibraryRestController.class); @Autowired private RequestManager requestManager; public void setRequestManager(RequestManager requestManager) { this.requestManager = requestManager; } @RequestMapping(value = "{libraryId}", method = RequestMethod.GET) public @ResponseBody String getLibraryById(@PathVariable Long libraryId) throws IOException { ObjectMapper mapper = new ObjectMapper(); try { Library l = requestManager.getLibraryById(libraryId); if (l != null) { mapper.getSerializationConfig().addMixInAnnotations(Project.class, ProjectSampleRecursionAvoidanceMixin.class); mapper.getSerializationConfig().addMixInAnnotations(Sample.class, SampleRecursionAvoidanceMixin.class); mapper.getSerializationConfig().addMixInAnnotations(User.class, UserInfoMixin.class); return mapper.writeValueAsString(l); } return mapper.writeValueAsString(RestUtils.error("No such library with that ID.", "libraryId", libraryId.toString())); } catch (IOException ioe) { return mapper.writeValueAsString(RestUtils.error("Cannot retrieve library: " + ioe.getMessage(), "libraryId", libraryId.toString())); } } @RequestMapping(method = RequestMethod.GET) public @ResponseBody String listAllLibraries() throws IOException { Collection<Library> libraries = requestManager.listAllLibraries(); ObjectMapper mapper = new ObjectMapper(); mapper.getSerializationConfig().addMixInAnnotations(Project.class, ProjectSampleRecursionAvoidanceMixin.class); mapper.getSerializationConfig().addMixInAnnotations(Sample.class, SampleRecursionAvoidanceMixin.class); mapper.getSerializationConfig().addMixInAnnotations(User.class, UserInfoMixin.class); return mapper.writeValueAsString(libraries); } }