/* * Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK * MISO project contacts: Robert Davey, Mario Caccamo @ TGAC * ********************************************************************* * * This file is part of MISO. * * MISO is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * MISO is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with MISO. If not, see <http://www.gnu.org/licenses/>. * * ********************************************************************* */ package uk.ac.bbsrc.tgac.miso.core.data.impl; import com.eaglegenomics.simlims.core.SecurityProfile; import com.eaglegenomics.simlims.core.User; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.util.AutoPopulatingList; import uk.ac.bbsrc.tgac.miso.core.data.AbstractSequencerPartitionContainer; import uk.ac.bbsrc.tgac.miso.core.data.SequencerPoolPartition; import uk.ac.bbsrc.tgac.miso.core.util.LimsUtils; import java.io.Serializable; import java.util.List; /** * uk.ac.bbsrc.tgac.miso.core.data.impl * <p/> * Info * * @author Rob Davey * @date 14-May-2012 * @since 0.1.6 */ public class SequencerPartitionContainerImpl extends AbstractSequencerPartitionContainer<SequencerPoolPartition> implements Serializable { protected static final Logger log = LoggerFactory.getLogger(SequencerPartitionContainerImpl.class); private List<SequencerPoolPartition> partitions = new AutoPopulatingList<SequencerPoolPartition>(PartitionImpl.class); private int partitionLimit = 8; /** * Construct a new SequencerPartitionContainer with a default empty SecurityProfile */ public SequencerPartitionContainerImpl() { setSecurityProfile(new SecurityProfile()); } /** * Construct a new SequencerPartitionContainer with a SecurityProfile owned by the given User * * @param user of type User */ public SequencerPartitionContainerImpl(User user) { setSecurityProfile(new SecurityProfile(user)); } @Override public List<SequencerPoolPartition> getPartitions() { return partitions; } @Override public void setPartitions(List<SequencerPoolPartition> partitions) { this.partitions = partitions; } @Override public SequencerPoolPartition getPartitionAt(int partitionNumber) throws IndexOutOfBoundsException { return partitions.get(partitionNumber-1); } public void setPartitionLimit(int partitionLimit) { this.partitionLimit = partitionLimit; } public void initEmptyPartitions() { getPartitions().clear(); for (int i = 0; i < partitionLimit; i++) { addNewPartition(); } } @Override public void addNewPartition() { if (getPartitions().size() < partitionLimit) { PartitionImpl partition = new PartitionImpl(); partition.setSequencerPartitionContainer(this); partition.setPartitionNumber(getPartitions().size() + 1); partition.setSecurityProfile(getSecurityProfile()); getPartitions().add(partition); } else { log.warn("This partition container is limited to "+partitionLimit+" partitions"); } } public void addPartition(SequencerPoolPartition partition) { if (getPartitions().size() < partitionLimit) { if (!getPartitions().contains(partition)) { if (partition.getSequencerPartitionContainer() == null) partition.setSequencerPartitionContainer(this); if (partition.getPartitionNumber() == null ) partition.setPartitionNumber(getPartitions().size() + 1); if (partition.getSecurityProfile() == null ) partition.setSecurityProfile(getSecurityProfile()); getPartitions().add(partition); } else { log.warn("This partition container already contains that partition"); } } else { log.warn("This partition container is limited to "+partitionLimit+" partitions"); } } @Override public String toString() { StringBuilder sb = new StringBuilder(); sb.append(super.toString()); if (getPartitions() != null) { sb.append(" : ["); sb.append(LimsUtils.join(getPartitions(), ",")); sb.append("]"); } else { sb.append(" : "); sb.append("!!!!! NULL PARTITIONS !!!!!"); } return sb.toString(); } }