/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements. See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.apache.mahout.math.hadoop.stochasticsvd; import java.io.IOException; import java.util.Random; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; import org.apache.hadoop.io.IntWritable; import org.apache.hadoop.io.SequenceFile; import org.apache.hadoop.io.Writable; import org.apache.mahout.common.RandomUtils; import org.apache.mahout.math.DenseMatrix; import org.apache.mahout.math.DenseVector; import org.apache.mahout.math.Matrix; import org.apache.mahout.math.RandomAccessSparseVector; import org.apache.mahout.math.Vector; import org.apache.mahout.math.VectorWritable; import org.apache.mahout.math.hadoop.stochasticsvd.qr.GramSchmidt; public class SSVDTestsHelper { private SSVDTestsHelper() { } static void generateDenseInput(Path outputPath, FileSystem dfs, Vector svalues, int m, int n) throws IOException { generateDenseInput(outputPath, dfs, svalues, m, n, 0); } /** * Generate some randome but meaningful input with singular value ratios of n, * n-1...1 * * @param outputPath */ static void generateDenseInput(Path outputPath, FileSystem dfs, Vector svalues, int m, int n, int startRowKey) throws IOException { Random rnd = RandomUtils.getRandom(); int svCnt = svalues.size(); Matrix v = generateDenseOrthonormalRandom(n, svCnt, rnd); Matrix u = generateDenseOrthonormalRandom(m, svCnt, rnd); // apply singular values Matrix mx = m > n ? v : u; for (int i = 0; i < svCnt; i++) { mx.assignColumn(i, mx.viewColumn(i).times(svalues.getQuick(i))); } SequenceFile.Writer w = SequenceFile.createWriter(dfs, dfs.getConf(), outputPath, IntWritable.class, VectorWritable.class); try { Vector outV = new DenseVector(n); Writable vw = new VectorWritable(outV); IntWritable iw = new IntWritable(); for (int i = 0; i < m; i++) { iw.set(startRowKey + i); for (int j = 0; j < n; j++) { outV.setQuick(j, u.viewRow(i).dot(v.viewRow(j))); } w.append(iw, vw); } } finally { w.close(); } } static Matrix generateDenseOrthonormalRandom(int m, int n, Random rnd) { Matrix result = new DenseMatrix(m, n); for (int j = 0; j < n; j++) { for (int i = 0; i < m; i++) { result.setQuick(i, j, rnd.nextDouble() - 0.5); } } GramSchmidt.orthonormalizeColumns(result); SSVDPrototypeTest.assertOrthonormality(result, false, 1.0e-10); return result; } // do not use. for internal consumption only. public static void main(String[] args) throws Exception { // create 1Gb input for distributed tests. Configuration conf = new Configuration(); FileSystem dfs = FileSystem.getLocal(conf); Path outputDir=new Path("/tmp/DRM"); dfs.mkdirs(outputDir); // for ( int i = 1; i <= 10; i++ ) { // generateDenseInput(new Path(outputDir,String.format("part-%05d",i)),dfs, // new DenseVector ( new double[] { // 15,14,13,12,11,10,9,8,7,6,5,4,3,2,1,0.8,0.3,0.1,0.01 // }),1200,10000,(i-1)*1200); // } /* * create 2Gb sparse 4.5 m x 4.5m input . (similar to wikipedia graph). * * In order to get at 2Gb, we need to generate ~ 40 non-zero items per row average. * */ outputDir = new Path("/tmp/DRM-sparse"); Random rnd = RandomUtils.getRandom(); SequenceFile.Writer w = SequenceFile.createWriter(dfs, dfs.getConf(), new Path(outputDir, "sparse.seq"), IntWritable.class, VectorWritable.class); try { IntWritable iw = new IntWritable(); VectorWritable vw = new VectorWritable(); int avgNZero = 40; int n = 4500000; for (int i = 1; i < n; i++) { Vector vector = new RandomAccessSparseVector(n); double nz = Math.round(avgNZero * (rnd.nextGaussian() + 1)); if (nz < 0) { nz = 0; } for (int j = 1; j < nz; j++) { vector.set(rnd.nextInt(n), rnd.nextGaussian() * 25 + 3); } iw.set(i); vw.set(vector); w.append(iw, vw); } } finally { w.close(); } } }