/** * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements. See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.apache.mahout.clustering.spectral.common; import java.io.IOException; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.Path; import org.apache.hadoop.io.IntWritable; import org.apache.hadoop.mapreduce.Job; import org.apache.hadoop.mapreduce.Mapper; import org.apache.hadoop.mapreduce.lib.input.FileInputFormat; import org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat; import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat; import org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat; import org.apache.mahout.math.RandomAccessSparseVector; import org.apache.mahout.math.Vector; import org.apache.mahout.math.VectorWritable; import org.apache.mahout.math.function.Functions; /** * <p>Given a DistributedRowMatrix, this job normalizes each row to unit * vector length. If the input is a matrix U, and the output is a matrix * W, the job follows:</p> * * <p>{@code v_ij = u_ij / sqrt(sum_j(u_ij * u_ij))}</p> */ public final class UnitVectorizerJob { private UnitVectorizerJob() { } public static void runJob(Path input, Path output) throws IOException, InterruptedException, ClassNotFoundException { Configuration conf = new Configuration(); Job job = new Job(conf, "UnitVectorizerJob"); job.setInputFormatClass(SequenceFileInputFormat.class); job.setOutputKeyClass(IntWritable.class); job.setOutputValueClass(VectorWritable.class); job.setOutputFormatClass(SequenceFileOutputFormat.class); job.setMapperClass(UnitVectorizerMapper.class); job.setNumReduceTasks(0); FileInputFormat.addInputPath(job, input); FileOutputFormat.setOutputPath(job, output); job.setJarByClass(UnitVectorizerJob.class); job.waitForCompletion(true); } public static class UnitVectorizerMapper extends Mapper<IntWritable, VectorWritable, IntWritable, VectorWritable> { @Override protected void map(IntWritable row, VectorWritable vector, Context context) throws IOException, InterruptedException { // set up the return value and perform the computations double norm = vectorNorm(vector.get()); Vector w = vector.get().assign(Functions.div(norm)); RandomAccessSparseVector out = new RandomAccessSparseVector(w); // finally write the output context.write(row, new VectorWritable(out)); } /** * Sums the squares of all elements together, then takes the square root * of that sum. * @param u * @return */ private static double vectorNorm(Iterable<Vector.Element> u) { double retval = 0.0; for (Vector.Element e : u) { retval += Functions.POW.apply(e.get(), 2); } return Functions.SQRT.apply(retval); } } }