/** * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements. See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.apache.mahout.clustering.kmeans; import java.util.Collection; import java.util.HashSet; import java.util.List; import com.google.common.collect.Lists; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; import org.apache.hadoop.mapreduce.Job; import org.apache.mahout.clustering.Cluster; import org.apache.mahout.clustering.ClusteringTestUtils; import org.apache.mahout.common.MahoutTestCase; import org.apache.mahout.common.distance.ManhattanDistanceMeasure; import org.apache.mahout.common.iterator.sequencefile.SequenceFileValueIterable; import org.apache.mahout.math.RandomAccessSparseVector; import org.apache.mahout.math.Vector; import org.apache.mahout.math.VectorWritable; import org.junit.Before; import org.junit.Test; public final class TestRandomSeedGenerator extends MahoutTestCase { private static final double[][] RAW = {{1, 1}, {2, 1}, {1, 2}, {2, 2}, {3, 3}, {4, 4}, {5, 4}, {4, 5}, {5, 5}}; private FileSystem fs; private static List<VectorWritable> getPoints() { List<VectorWritable> points = Lists.newArrayList(); for (double[] fr : RAW) { Vector vec = new RandomAccessSparseVector(fr.length); vec.assign(fr); points.add(new VectorWritable(vec)); } return points; } @Override @Before public void setUp() throws Exception { super.setUp(); Configuration conf = new Configuration(); fs = FileSystem.get(conf); } /** Story: test random seed generation generates 4 clusters with proper ids and data */ @Test public void testRandomSeedGenerator() throws Exception { List<VectorWritable> points = getPoints(); Job job = new Job(); Configuration conf = job.getConfiguration(); job.setMapOutputValueClass(VectorWritable.class); Path input = getTestTempFilePath("random-input"); Path output = getTestTempDirPath("random-output"); ClusteringTestUtils.writePointsToFile(points, input, fs, conf); RandomSeedGenerator.buildRandom(conf, input, output, 4, new ManhattanDistanceMeasure()); int clusterCount = 0; Collection<Integer> set = new HashSet<Integer>(); for (Cluster value : new SequenceFileValueIterable<Cluster>(new Path(output, "part-randomSeed"), true, conf)) { clusterCount++; int id = value.getId(); assertTrue(set.add(id)); // validate unique id's Vector v = value.getCenter(); assertVectorEquals(RAW[id], v); // validate values match } assertEquals(4, clusterCount); // validate sample count } private static void assertVectorEquals(double[] raw, Vector v) { assertEquals(raw.length, v.size()); for (int i=0; i < raw.length; i++) { assertEquals(raw[i], v.getQuick(i), EPSILON); } } }