/**
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.mahout.clustering.meanshift;
import java.io.IOException;
import java.util.List;
import com.google.common.collect.Lists;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.WritableComparable;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.mahout.clustering.WeightedVectorWritable;
import org.apache.mahout.common.iterator.sequencefile.PathFilters;
import org.apache.mahout.common.iterator.sequencefile.PathType;
import org.apache.mahout.common.iterator.sequencefile.SequenceFileDirValueIterable;
public class MeanShiftCanopyClusterMapper
extends Mapper<WritableComparable<?>, MeanShiftCanopy, IntWritable, WeightedVectorWritable> {
private List<MeanShiftCanopy> canopies;
@Override
protected void map(WritableComparable<?> key, MeanShiftCanopy canopy, Context context)
throws IOException, InterruptedException {
// canopies use canopyIds assigned when input vectors are processed as vectorIds too
int vectorId = canopy.getId();
for (MeanShiftCanopy msc : canopies) {
for (int containedId : msc.getBoundPoints().toList()) {
if (vectorId == containedId) {
context.write(new IntWritable(msc.getId()),
new WeightedVectorWritable(1, canopy.getCenter()));
}
}
}
}
@Override
protected void setup(Context context) throws IOException, InterruptedException {
super.setup(context);
canopies = getCanopies(context.getConfiguration());
}
public static List<MeanShiftCanopy> getCanopies(Configuration conf) {
String statePath = conf.get(MeanShiftCanopyDriver.STATE_IN_KEY);
List<MeanShiftCanopy> canopies = Lists.newArrayList();
Path path = new Path(statePath);
for (MeanShiftCanopy value
: new SequenceFileDirValueIterable<MeanShiftCanopy>(path, PathType.LIST, PathFilters.logsCRCFilter(), conf)) {
canopies.add(value);
}
return canopies;
}
}